Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02688 ATGTCGTCGGTTTACGTTCTAGAACCTCCGACAAAGGGGAAAGTGGTAGTGAGCACCACGCGCGGACCTTTGGACATCGAGCTATGGCCGAAGGAGGCTCCAAAAGCCGTGAGGAACTTCGTGCAGCTCTGCCTCGAAAACTATTACGACAACACTATCTTCCACCGCGTCATCAAGGACTTCCTCGTCCAAGGTGGCGACCCCACCGGCTCTGGCACCGGAGGTGAAAGCGTTTATGGTGGTGTTTTTGCTGATGAGTTTCATTCTCGTTTAAAATTCAAGCACAGAGGAATAGTTGCGATGGCAAATGCTGGATCTCCAAATTCCAATGGAAGATTTCTTTCCTTTATGAGTAAGGACGTTGACGGATTCCCTGCCTTCCATATCACCACAGTGACAGGAGATACAATGTATAATCTTTTGAGACTGGGTGAAGTTGAAACTGATAAGAATGACCGGCCTTTAGATCCGCCAAAAATTTTATCAGTCGAGGTGTTATGGAATCCATTTGAAGATATTGTTCCAAGAACACTTCAGAAATCTCGGACTGAAGCTAGAGTTGATACTGAAAGTAAAGAACCAAAGAAGAAAGGTGTAAAAAAATTGAACTTGCTTTCATTTGGGGAAGAAGCTGAAGAAGAGGAAAAGGAATTGGCGTCAGTGAAGCAAAAGATTAAGAGCAGTCATGATGTCTTGAACGATCCTCGTCTTCTAAAGGAAGAAACACCTGATGGTGAATTGAGTACGTCAAGAAGAGATTTGCAGCTGTCTGTTAGGGAGACACTTAACGCAAAGAAAGAAGAGCCTCAGAAAGATTCAGCACCTGGTAACATTGCTCGTCTTGATTCCAGTGATGATGATGAAGCAGATTTTGATTCAAGAATGCGCATGCAGATACTCAAAAAGAGGAAGGAGTTGGGTGATCTCCCTCCAAAGCCTAAGTTGCAAAAAGCTGGAAGATCCATTCCAGAGAACCATGATACGTCAGCACTAAGGTCCAATGCTGCTAGTGTTGATGAGGATCAACCAAAGGTGGAAAAGTTGTCCATGAAGAAAAAGGGAGTGGGATCTGAAGCAAGAGCTGAACGAATGGCTAATGCAGATGCAGATCTGCAACTATTAAATGAAACTGAGAGAGGAAGACAATTGCAGAAGCAGAAGAAACGTCGACTTCAAGGGCGCGAAGATGAAGTTCTGGCTAAACTTCAAAAGTTTAAGAATTCTTTAGCAGCAAAGGAGACACTCCCAGCTAGCGAATCTGATGTTAAAAATGAGGATTTGTCTGACTGGAAAGGTGACCGCATGTCACGTAATGAGGACCCAAATGACTATGTTGTGCACGACCCACTTCTGGAAAAGGGGAAAGAAAAGTTTAATAGGATGATGGCCAAACAAAAGAGACGAGAACGAGAGTGGGCTGGGAGATCTCTTACTTGA 1437 0.4412 MSSVYVLEPPTKGKVVVSTTRGPLDIELWPKEAPKAVRNFVQLCLENYYDNTIFHRVIKDFLVQGGDPTGSGTGGESVYGGVFADEFHSRLKFKHRGIVAMANAGSPNSNGRFLSFMSKDVDGFPAFHITTVTGDTMYNLLRLGEVETDKNDRPLDPPKILSVEVLWNPFEDIVPRTLQKSRTEARVDTESKEPKKKGVKKLNLLSFGEEAEEEEKELASVKQKIKSSHDVLNDPRLLKEETPDGELSTSRRDLQLSVRETLNAKKEEPQKDSAPGNIARLDSSDDDEADFDSRMRMQILKKRKELGDLPPKPKLQKAGRSIPENHDTSALRSNAASVDEDQPKVEKLSMKKKGVGSEARAERMANADADLQLLNETERGRQLQKQKKRRLQGREDEVLAKLQKFKNSLAAKETLPASESDVKNEDLSDWKGDRMSRNEDPNDYVVHDPLLEKGKEKFNRMMAKQKRREREWAGRSLT 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02688 478 CDD cyclophilin_CeCYP16-like 8 177 - -
Vimu1g02688 478 MobiDBLite consensus disorder prediction 225 248 - -
Vimu1g02688 478 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 22 165 IPR002130 GO:0000413|GO:0003755
Vimu1g02688 478 MobiDBLite consensus disorder prediction 339 365 - -
Vimu1g02688 478 MobiDBLite consensus disorder prediction 410 448 - -
Vimu1g02688 478 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 49 66 IPR020892 GO:0003755|GO:0006457
Vimu1g02688 478 MobiDBLite consensus disorder prediction 418 448 - -
Vimu1g02688 478 MobiDBLite consensus disorder prediction 258 273 - -
Vimu1g02688 478 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 11 216 IPR044666 -
Vimu1g02688 478 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 15 165 IPR002130 GO:0000413|GO:0003755
Vimu1g02688 478 Gene3D - 2 180 IPR029000 -
Vimu1g02688 478 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 97 112 IPR002130 GO:0000413|GO:0003755
Vimu1g02688 478 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 54 66 IPR002130 GO:0000413|GO:0003755
Vimu1g02688 478 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 28 43 IPR002130 GO:0000413|GO:0003755
Vimu1g02688 478 MobiDBLite consensus disorder prediction 225 395 - -
Vimu1g02688 478 MobiDBLite consensus disorder prediction 322 336 - -
Vimu1g02688 478 Coils Coil 204 231 - -
Vimu1g02688 478 MobiDBLite consensus disorder prediction 281 311 - -
Vimu1g02688 478 SUPERFAMILY Cyclophilin-like 14 182 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02688 Vimu-Chr1 38806638 38820191 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02688 9 170 U-box Gene Family AT5G67530 43.030 5.60e-34 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02688 K12737 - gmx:100793148 745.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02688 1 38806638 38820191 Vimu1g02688 1 38806638 38820191 ECH