Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02686 ATGGAGGAGATGTCATTTGTGGTTGTAGTGCCATTAAGAGTAGGTAATTGTTGTTCAGTCTGTGATAACACAACCATAGTTCCCCACATGGATGTATCCAGGTTTAAGCTGATGGCGGATACAGGGTTGTTATCTAATTCTGTAACTAAGGTTTTCACCAAGACAGTTGCAGGTTCCGATGATTGTGATGATAGTGGCAATTTAGAGGATGAAGCTGGAATTACTGAGGTTATACCACCAAAACAGGATAGAGAAGGAGAGAGTCCTATGTTAGATATGATATCCCAAGATAGAAGCACTTTGGTTGGTGATGAAGTGTTAGCCGATGAAATCGAGGAAGACTCATTGTCATTGGAAGGTGATCAGGTTGTTGATAGCTCATGTTCTCTTTCGGCAGTCAGTGAGAACAGTAGTGTGTGTGGAGAGGAGTCCTTGTGTTTCGATGCTACTTCAGATGTTGGGACACCATTTTCTGCTTATGTAGATAAGAGCATTGGTGCTGTCAATATTGCTGCCGAGGCAGTTGATTTGGAGGAATCAAATGTTGACACAGATATTACAACAGAACCTCTTGCTGCGGCAGTGAGCCTTGAAGAAGAAAATGGAATTAGAACTGGCCCTAAGTCTTCTGATGCCGTTCTTCATCAGTTGCCTCAGGAAAAGGGGGTGAGTGGAATGGTTGGTCGGAGTGTTTTTGAATTGGATTATACCCCACTTTATGGATTCATATCTGTGTGTGGAAGAAGACCTGAGATGGAGGATGCGCTTGCAACTGTACCTCGATTTATGAAAATTCCTATTCAGATGTTAATTGGTGATCGGGTGCTTGATGGAATAAACAAGTGTTTTAGTCAGCAGACGACTCATTTCTTTGGAGTCTATGATGGCCATGGTGGCTCTCAGGTTGCAAAGTATTGTCAAGATCGTATCCACAAGGCTTTAGCTGAGGAAATAGAATTTTTTAAGGAAGCTCTAATCAGTGGAAGTATGAAGGAAGGTTGTCAAGATCAGTGGAAAAAAGCTTTAACCAATTGTTTCATAAAAGTTGATGCTGAAGTTGGAGGGAAAGTTGATAATGAACCTGTTGCCCCAGAAACTGTTGGTTCCACTGCTGTTGTTGCTGTTATTTGTTCATCTCATATCATAGTTGCAAATTGTGGTGATTCAAGAGCGGTTCTATGTCGTGGCAAAGAACCCATTGCATTATCAGTGGACCATAAACCCAACCGACCTGATGAATATGCAAGAATTGAGGCAGCTGGAGGAAAAGTGATTCAATGGAATGGTCATCGTGTATTTGGTGTTCTTGCAATGTCAAGGTCTATCGGTGATAGATATTTGAAGCCATGGATCATTCCAGAACCAGAAGTTAAGTTTCTTCCCCGCACAAAAGACGACGAGTGTCTCATTCTGGCCAGTGATGGTCTGTGGGATGTGATGACGAACGAAGAGGTGTGTGATCTTGCCCGGCGACGGATAGTTCTCTGGTACAAGAAAAATGGCTTGGAACAACCATCGTCAGAAAGGGGAGAGGGAGTTGATCCTGCTGCACAAGCAGCAGCAGAATACCTATCAAACCGTGCACTTCAGAAAGGAAGCAAAGATAACATCACTGTGATTGTGATTGATTTGAAACCCCAAAGGAAATATAAGAGCAAGTCATGA 1665 0.427 MEEMSFVVVVPLRVGNCCSVCDNTTIVPHMDVSRFKLMADTGLLSNSVTKVFTKTVAGSDDCDDSGNLEDEAGITEVIPPKQDREGESPMLDMISQDRSTLVGDEVLADEIEEDSLSLEGDQVVDSSCSLSAVSENSSVCGEESLCFDATSDVGTPFSAYVDKSIGAVNIAAEAVDLEESNVDTDITTEPLAAAVSLEEENGIRTGPKSSDAVLHQLPQEKGVSGMVGRSVFELDYTPLYGFISVCGRRPEMEDALATVPRFMKIPIQMLIGDRVLDGINKCFSQQTTHFFGVYDGHGGSQVAKYCQDRIHKALAEEIEFFKEALISGSMKEGCQDQWKKALTNCFIKVDAEVGGKVDNEPVAPETVGSTAVVAVICSSHIIVANCGDSRAVLCRGKEPIALSVDHKPNRPDEYARIEAAGGKVIQWNGHRVFGVLAMSRSIGDRYLKPWIIPEPEVKFLPRTKDDECLILASDGLWDVMTNEEVCDLARRRIVLWYKKNGLEQPSSERGEGVDPAAQAAAEYLSNRALQKGSKDNITVIVIDLKPQRKYKSKS 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02686 554 CDD PP2Cc 240 544 IPR001932 -
Vimu1g02686 554 Gene3D - 226 554 IPR036457 -
Vimu1g02686 554 Pfam Protein phosphatase 2C 274 537 IPR001932 -
Vimu1g02686 554 ProSiteProfiles PPM-type phosphatase domain profile. 239 544 IPR001932 -
Vimu1g02686 554 FunFam Protein phosphatase 2C 16 227 554 - -
Vimu1g02686 554 ProSitePatterns PPM-type phosphatase domain signature. 290 298 IPR000222 GO:0043169
Vimu1g02686 554 PANTHER PROTEIN PHOSPHATASE 199 544 IPR015655 GO:0004722|GO:0006470
Vimu1g02686 554 SUPERFAMILY PP2C-like 232 546 IPR036457 -
Vimu1g02686 554 SMART PP2C_4 227 542 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02686 Vimu-Chr1 38782451 38788110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02686 136 554 PP2C-type Phosphatase Gene Family AT1G17550 54.884 9.49e-161 466
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02686 K14497 - gmx:100805281 972.615