LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g02685	ATGTCATATTATATTATTGTTTTTTTTCTTATCTTTTTCTTTCTGTCATTTTTTTTCCACAATAAACTAAGTCTAATTTTGGAAGAATGTGCAGAAAAGATAGCACGCCAAGCAAATGTGACGATGATGCTTTTCTTTTCTTTTGCATATATTCATTCATTCATCAATGACAAGTTGAAGGTTGCATTTTTCCAAGTTTCAATCTTCACTCACCAAATCATGTCAGGCAATCATCACTTCATTCTCTTCATCTTCTTCACCACCTTCTCCTTCTTCTCTCCCATTCATTCCCTCTTCTTCAACATAACCAACTTTGATGATCCAACAACCTCGTCCGACATATCCTACCAGGGTGATGGAAGATCAACCAACGGCTCCATCGACCTCAACAAAGTTAGCTACTATTTTCGTGTCGGAAGGGCTCTATACTCCAAACCCCTCCACCTCTGGGACCCATCTTCCAATGTAGTCACCGACTTTGTCACACGCTTCACCTTCTCCATTGACAGAGTAAACATCTCTGAGACCTCTTATGCAGATGGCTTTGCGTTTTACCTAGCTCCTCTTGGCTACCAGATCCCACCAAATTCCGCAGGTGGCACCTTTGCCCTCTTCAACGCCACCACCAACAGTGAACTCCCTGAAAACCATGTTTTTGCTGTGGAGTTTGACACCTTCATTGGCTCCACTGATCCCCCAATGAAACATGTCGGTGTAGACGACAACTCTTTAACCTCTGTGGCGTTTGCGAACTTTGACATCGACAAGAACCTCGGAAAAATGTGTCACACTTTGATCACCTACACCGCCTCCACTCAAACCCTCTTTGTTGCTTGGTCCTTCAAAGGAATACCAACCACAAAGGACAACGACAACAACTCCTCTCTGTCTTACCAGATCGACCTCAAGAAAATTCTTCCAGAGTGGGTCAATATTGGTTTCTCTGCCTCAACCGGACTTTACACTGAACACAATGTTATTTATTCGTGGGAGTTCAACTCCACTTTGAAAGATTCCTCCGTGGATAATGAGGGTGTGAAACTAAAACATAAAGGGTCAAAGCTTGTGTTAATAGTTGCGGTTCTCTGTCCACTGGTTCTTCTGTTAGTGGCGGCGAGTGTTTTTGTCTTCGTGTTGATAAGGAAAAAGAGAAGAATGGATGATTGTATGTTATATGATGTTGGAGACGACGAGGTGGGTCCAACTTCAGTTAAATTTGATCTGGATAGAGGAACTATCCCGAGAAGATTCGAGTACAAAGAGCTTGTGGATGCCACTAACGGTTTTTCAGACGAAAGAAGGCTGGGACAAGGAGCTTCGGGGCAGGTATACAAGGGTGTGTTGAGTTACCTGGGAAGAGTTGTGGCCGTGAAGAGAATATTTGCAGACTTCGAGAATTCGGAGAGAGTTTTCACCAACGAGGTCAGGATAATAAGCCGTTTAATCCACAAAAACTTGGTCCAGTTCATAGGGTGGTGTCACGAAGAAGGTGAATTTCTGTTGGTTTTCGAGTACATGCAAAATGGAAGCCTGGACTCTCATTTGTTTGGAAACAAGAGGATTTTGGAGTGGCGTGCGAGGTACAAGATTGCTTTAGGAGTGGTAACTGCGCTTCAATATCTTCACGAGGATGCAGAGCAATGTGTGCTACACAGGGACATAAAATCAGCGAATGTGTTGTTGGACATGGAATTCAACACAAAGGTGGGGGATTTTGGCATGGCGAAATTGGTGGATCCAAGGCTGAGAACTCAACGAACTGGGGTGGTCGGAACTTATGGTTACTTAGCACCTGAATACGTGAACGGAGGAAGAGCAAGCAGGGAATCAGATATATACAGTTTTGGAGTGGTGGCATTGGAGATAGCAAGTGGGAGGAGGACATACCAAGATGGTGAGTTTCATGTTAGTTTGATGAATTGGGTGTGGCAGCTTTATGTGGAAGGAGAACTTATGAGGGCTGCAGATGACAAACTGAAAGAGGAGTTTGATGAGAATGAGATGAGAAGTTTGCTTGTGGTGGGGTTGTGGTGCACAAACCCTAATGATAAAGAGAGGCCTAAGGCTGCAGAAATCATGAAGGTTTTGCAGCTTCAATCACCATTGCCGCTGCTTCCACTTGATATGTATGAACGTGCTCCTCCCATGCAAGCCATTAGAATGCCACATCATCATTCAGGCCAATCTTCACCCATTACTAACAGTCTTGTTAGTGTTGGAAGATAG	2226	0.4389	MSYYIIVFFLIFFFLSFFFHNKLSLILEECAEKIARQANVTMMLFFSFAYIHSFINDKLKVAFFQVSIFTHQIMSGNHHFILFIFFTTFSFFSPIHSLFFNITNFDDPTTSSDISYQGDGRSTNGSIDLNKVSYYFRVGRALYSKPLHLWDPSSNVVTDFVTRFTFSIDRVNISETSYADGFAFYLAPLGYQIPPNSAGGTFALFNATTNSELPENHVFAVEFDTFIGSTDPPMKHVGVDDNSLTSVAFANFDIDKNLGKMCHTLITYTASTQTLFVAWSFKGIPTTKDNDNNSSLSYQIDLKKILPEWVNIGFSASTGLYTEHNVIYSWEFNSTLKDSSVDNEGVKLKHKGSKLVLIVAVLCPLVLLLVAASVFVFVLIRKKRRMDDCMLYDVGDDEVGPTSVKFDLDRGTIPRRFEYKELVDATNGFSDERRLGQGASGQVYKGVLSYLGRVVAVKRIFADFENSERVFTNEVRIISRLIHKNLVQFIGWCHEEGEFLLVFEYMQNGSLDSHLFGNKRILEWRARYKIALGVVTALQYLHEDAEQCVLHRDIKSANVLLDMEFNTKVGDFGMAKLVDPRLRTQRTGVVGTYGYLAPEYVNGGRASRESDIYSFGVVALEIASGRRTYQDGEFHVSLMNWVWQLYVEGELMRAADDKLKEEFDENEMRSLLVVGLWCTNPNDKERPKAAEIMKVLQLQSPLPLLPLDMYERAPPMQAIRMPHHHSGQSSPITNSLVSVGR	741

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g02685	741	ProSiteProfiles	Protein kinase domain profile.	429	705	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu1g02685	741	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	549	561	IPR008271	GO:0004672\|GO:0006468
	Vimu1g02685	741	ProSitePatterns	Protein kinases ATP-binding region signature.	435	458	IPR017441	GO:0005524
	Vimu1g02685	741	MobiDBLite	consensus disorder prediction	720	741	-	-
	Vimu1g02685	741	FunFam	L-type lectin-domain containing receptor kinase IX.1	414	505	-	-
	Vimu1g02685	741	FunFam	L-type lectin-domain containing receptor kinase IX.1	96	350	-	-
	Vimu1g02685	741	PANTHER	-	122	699	-	-
	Vimu1g02685	741	ProSitePatterns	Legume lectins alpha-chain signature.	306	315	IPR000985	-
	Vimu1g02685	741	MobiDBLite	consensus disorder prediction	723	741	-	-
	Vimu1g02685	741	SMART	serkin_6	429	702	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vimu1g02685	741	Gene3D	Transferase(Phosphotransferase) domain 1	506	701	-	-
	Vimu1g02685	741	Gene3D	-	96	348	-	-
	Vimu1g02685	741	CDD	lectin_legume_LecRK_Arcelin_ConA	100	336	IPR001220	GO:0030246
	Vimu1g02685	741	Gene3D	Phosphorylase Kinase; domain 1	414	505	-	-
	Vimu1g02685	741	SUPERFAMILY	Protein kinase-like (PK-like)	413	718	IPR011009	-
	Vimu1g02685	741	Pfam	Legume lectin domain	99	340	IPR001220	GO:0030246
	Vimu1g02685	741	FunFam	L-type lectin-domain containing receptor kinase IX.1	506	706	-	-
	Vimu1g02685	741	SUPERFAMILY	Concanavalin A-like lectins/glucanases	96	336	IPR013320	-
	Vimu1g02685	741	Pfam	Protein kinase domain	430	694	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g02685	Vimu-Chr1	38769194	38772073	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu1g02685	81	709	Receptor kinase-like Gene Family	AT5G10530	43.799	2.38e-178	523

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Vimu1g02685		Pkinase	1.5e-50	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g02685	-		-	vun:114193012	1265.75