Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02679 ATGGCTGCCACTGAAACCTTTGGAGAGATCATAGATGGTGATGTCTTCAAGTACTATGCACATGGCTGCTGGAACAAGTCCTCTTCTGGGAAATCTGTTCCCATCATCAATCCCTCCACTAGGAAGCCCCACTTCAAGGTCCAAGCTTGTACCCGGGAAGAGGTTGATAGGGTCATGGAATCAGCAAAAAAAGCTCAAAAATCATGGGCCAAGACTCCACTGTGGAAAAGAGCAGAGTTGCTTCACAAGGCTGCAGCAATACTGAAGGAACACAAAGAACCTATTGCTGAGTGTCTGGTTAAGGAGATTGCAAAGCCAGCTAAAGATGCTGTCACTGAAGTGGTCAGATCAGGAGATTTGATCTCATATTGTGCTGAGGAAGGTGTAAGAATTCTTGGGGAAGGAAAGTTTCTGGTCTCTGATAGTTTTCCAGGCAATGAAAGAACCAAATACTGTCTCTCTTCCAAGATTCCACTTGGTGTTGTTTTAGCCATTCCACCTTTTAACTATCCTGTTAATCTGGCTGTTTCAAAGATTGCTCCAGCGCTTATTTCTGGAAACTCCATTGTTCTTAAACCCCCCACTCAGGGTGCCGTGGCTGCATTACACATGGTGCATTGCTTTCATTTGGCTGGTTTTCCCCAAGGTCTTATTAGCTGTGTCACAGGAAAAGGTTCCGAGATTGGTGATTTTCTTACAATGCATCCGGGGGTGAACTGCATAAGTTTTACTGGTGGAGACACCGGAATAGCAATATCAAAGAAGGCTGGCATGATTCCTCTTCAAATGGAGCTGGGAGGAAAAGATGCATGCATTGTTCTTGAAGATGCTGACTTGGATTTGGCAGCTGCTAACATGGTAAAAGGAGCTTTCTCTTACAGTGGTCAAAGATGCACTGCTGTAAAGGTTGCTTTGGTCATGGAATCGGTTGCCAACACCCTTGTTAAGAAAATCAATGATAAAGTTGCCAAGTTAACTGTTGGACCACCTGAGAAGGACTGTGATGTAACACCAGTTGTCACAGAATCCTCTGCTAACTTCATTGAAGGATTGGTAATGGATGCTAAGGAGAAAGGAGCCACATTCTGCCAGGAATACAAAAGGGAAGGAAATCTCATTTGGCCATTGCTGTTGGATAATGTTCGTCCTGATATGAGGATAGCATGGGAGGAGCCATTTGGACCAGTTTTGCCAGTTATCAGAATAAATTCTGTTGAGGAGGGAATCCACCACTGTAATGCCAGCAATTTTGGCCTTCAGGGATGTGTCTTCACCAAAGACATTAACAAAGCAATGTTAATAAGTGATGCAATGGAGACAGGAACAGTTCAAATTAACTCAGCACCATCTCGTGGACCTGATCACTTTCCTTTTCAGGGACTGAAGGATAGTGGAATTGGTTCTCAAGGAATCACCAATAGTATTAACATGATGACAAAGGTTAAGACTACAGTAATAAACTTACCAGCAGCTTCTTACACTATGGGATGA 1491 0.4359 MAATETFGEIIDGDVFKYYAHGCWNKSSSGKSVPIINPSTRKPHFKVQACTREEVDRVMESAKKAQKSWAKTPLWKRAELLHKAAAILKEHKEPIAECLVKEIAKPAKDAVTEVVRSGDLISYCAEEGVRILGEGKFLVSDSFPGNERTKYCLSSKIPLGVVLAIPPFNYPVNLAVSKIAPALISGNSIVLKPPTQGAVAALHMVHCFHLAGFPQGLISCVTGKGSEIGDFLTMHPGVNCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLAAANMVKGAFSYSGQRCTAVKVALVMESVANTLVKKINDKVAKLTVGPPEKDCDVTPVVTESSANFIEGLVMDAKEKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSVEEGIHHCNASNFGLQGCVFTKDINKAMLISDAMETGTVQINSAPSRGPDHFPFQGLKDSGIGSQGITNSINMMTKVKTTVINLPAASYTMG 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02679 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491
Vimu1g02679 496 CDD ALDH_F11_NP-GAPDH 15 487 - -
Vimu1g02679 496 SUPERFAMILY ALDH-like 16 487 IPR016161 GO:0016491
Vimu1g02679 496 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491
Vimu1g02679 496 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 267 457 - -
Vimu1g02679 496 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620
Vimu1g02679 496 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 22 288 - -
Vimu1g02679 496 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491
Vimu1g02679 496 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491
Vimu1g02679 496 PANTHER ALDEHYDE DEHYDROGENASE 3 495 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02679 Vimu-Chr1 38729206 38735050 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02679 1 496 Aldehyde Dehydrogenase Gene Family AT2G24270 86.290 0.0 903
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02679 K00131 - gmx:100789108 933.324