Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02677 ATGCTAACAGTCACGCTTTTTCACACAAACACGTTCTTTGGGGCAACTATAAATATTGAAGAGAAGGCAAAAACGTGGACTCAACGTTCGCCGGAGATGGCAAACTTCCACCGTAACAACGTCGAGAACGTGGTCCTTGGCCACCACCGTTCCAAGAGCACATCCGTCGCTGGTGGCCACTTCCGCCTATGGCACTCCCTCTCCACCACCTCCTTCCGCCGCCTGGTCTTCAATGCCGTCAGCTGCGGCGCCAGCTCCCGCTACGCCGAGAGATCGGACACGTCCTCCGAGAGACACCACCACCAACCGAAACAACAGCACCGGGACAAGACGAAGCCGAATAACGCGAAGTCGGAGAAGCTCTCGGATCTGCTGAACCTGGCGGAGGTCGAAGCTGACGCGGAAACGAAGAAGAAAGAGGACAAACTCGAGGAGCTGAAGAGCCTAGTGAAGGAGCTTCATAAGGAAGATGAGGAAGACAAAGAAGAAGAATCAATGACGCGGAGAAGAGAAGCTGCTTTGAAAGTGAGGTTGCTAGCCAAAGAGGATTTGGAAGTTAGAGGGACGCTCGCGATGCTTGGAGCTATTCCTCCTCTCGCCGCAATGCTCGATGAATCCAAAAACGACGTCGATTCGCTCGTTGCTTCTCTCTACGCGCTGCTCAACCTCGGAATCGGAAACGACGCGTCGCAATATAGGAATAAAGCAGCTATTGTGAAAGTTGGGTCAGTTGAGAAGATGCTGAAGCTGATTGAATCTCCAGACGGTCTAGATTCTTCGGTTTCTGAAGCAATTGTTGCGAATTTCCTTGGACTTAGTGCGTTGGATTCGAATAAGCCCATAATTGGGTCTTCGGCTTCAATTTCTTTCTTAGTTAGAACCCTTCAGAGTTTAGATGAAAAGAGTAGTCCCCAAGCCAAGCAAGATGCTTTACGGGCATTGTACAATCTTTCGATCTACCCAGCCAATGTTGCATTCGTTTTGGAAACAGCTTTGGTTCTGTTTCTGGTGAATTCAATAGGGGACATGGAGGTAACTGAAAGAGCGCTTGCGATTCTCAGCAACTTGGTGTCGACCCGAGAGGGTAGAAAGGCGATTAGTGCAGTGCAAGATTCGATTCCGATCCTGGTGGATGTGTTGAACTGGACAGATTCGCCAGAATGCCAGGAGAAGGCGTCCTACATCTTGATGGTTATGGCACACAGGTCTTATGGGGACAAACAGGCCATGATTGAGGCAGGGATTGCGTCATCACTGCTTGAGTTGTCCCTTTTGGGTACCACATTGGCTCAGAAAAGGGCATCAAGGATACTAGAAATTTTGAGGGTAGACAAAGGGAAACAGATTTCTGGGAGCTATGGCTTGGGTGCTGCTGTCTCTGCCCCTATTAGCGGCTCTTCGTCCGCGAAGCCGAATGACGGAGGGAGGGAGTGTTTTGACGAGGAGGAAGATATGATGAGTGAGGAGAAGAAAGCAGTGAAGCAACTAGTCCAACAGAGTTTGCAGAACAACATGAGGAAAATTGTGAAAAGGGCCAATTTGCCTCACGATATTGTGCCATCGGATCATTTTAAGTCACTCACCTCAAGTTCTACTTCAAAGAGCCTACCATTTTGA 1617 0.4941 MLTVTLFHTNTFFGATINIEEKAKTWTQRSPEMANFHRNNVENVVLGHHRSKSTSVAGGHFRLWHSLSTTSFRRLVFNAVSCGASSRYAERSDTSSERHHHQPKQQHRDKTKPNNAKSEKLSDLLNLAEVEADAETKKKEDKLEELKSLVKELHKEDEEDKEEESMTRRREAALKVRLLAKEDLEVRGTLAMLGAIPPLAAMLDESKNDVDSLVASLYALLNLGIGNDASQYRNKAAIVKVGSVEKMLKLIESPDGLDSSVSEAIVANFLGLSALDSNKPIIGSSASISFLVRTLQSLDEKSSPQAKQDALRALYNLSIYPANVAFVLETALVLFLVNSIGDMEVTERALAILSNLVSTREGRKAISAVQDSIPILVDVLNWTDSPECQEKASYILMVMAHRSYGDKQAMIEAGIASSLLELSLLGTTLAQKRASRILEILRVDKGKQISGSYGLGAAVSAPISGSSSAKPNDGGRECFDEEEDMMSEEKKAVKQLVQQSLQNNMRKIVKRANLPHDIVPSDHFKSLTSSSTSKSLPF 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02677 538 Coils Coil 479 499 - -
Vimu1g02677 538 MobiDBLite consensus disorder prediction 91 117 - -
Vimu1g02677 538 MobiDBLite consensus disorder prediction 518 538 - -
Vimu1g02677 538 Gene3D - 85 301 IPR011989 -
Vimu1g02677 538 MobiDBLite consensus disorder prediction 462 485 - -
Vimu1g02677 538 Gene3D - 302 447 IPR011989 -
Vimu1g02677 538 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 54 538 - -
Vimu1g02677 538 SMART arm_5 275 319 IPR000225 GO:0005515
Vimu1g02677 538 SMART arm_5 362 401 IPR000225 GO:0005515
Vimu1g02677 538 SMART arm_5 320 358 IPR000225 GO:0005515
Vimu1g02677 538 SMART arm_5 183 225 IPR000225 GO:0005515
Vimu1g02677 538 SMART arm_5 230 274 IPR000225 GO:0005515
Vimu1g02677 538 MobiDBLite consensus disorder prediction 88 125 - -
Vimu1g02677 538 SUPERFAMILY ARM repeat 146 441 IPR016024 -
Vimu1g02677 538 Coils Coil 125 163 - -
Vimu1g02677 538 MobiDBLite consensus disorder prediction 523 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02677 Vimu-Chr1 38692033 38694400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02677 162 445 U-box Gene Family AT1G67530 31.488 2.80e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02677 - - gmx:100788575 691.034
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02677 1 38692033 38694400 Vimu10g03021 10 41091066 41092633 PCT