Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02674 ATGATTACTGAACCGTGCATGGCTTCTGATGAGAAAATGAGTAGTTCAATTCAGCTTCGTGAAAGATCGAGTTCCAGACCCCGATATAACTTTGATGGGTCAGAAGATGAAGATCAAGTTATTTTCCATAGAGAACATGGAAAATCTGCAGAAAACGATGTGAAAGTTAATGGAGATGATACTAATGTTGGTGGCTCGGTTGAAGGGCTTCGTGGAAGCTCCAGTCAAAAAAGGAAAAATATTATCGATGATGGTAATGAGTCCGTTATTCTCCCTAGGAAACGAGGGAGACCAAGAAAAAGCATTACTAAAAGTGATACAACTGAAACTAATGTGAATAGTTTTGCTGATCGGCTACGAGAAAGATCTATAAAGAAGCCTAATTACATTGTTGATCAGTCAGATGAAGATTTGGATATTTTCCCCAGAAAACATGGGAACCCCATCGTCCAAATCGAACGAAGTGACACTGTTAGCCCACTCAGTGGCATTGATAAGATATTAGATTGTGAGATGCGTCCTGTGGTGGCTGCTGAAAGTGACGCACAAAAGTTGGAGTCGAAACACTATCTTGTTAAGTGGAAGGGACTCTCATATTTGCACTGCACATGGGTCCCAGAAGGAGAGTTTTTGAAGGCTTTCAAGACTCAGCCAGGTCTAAAGATCAGAATAAACAGCCTCCATCGTCGTATCGAATCTGCCAAGAATTTTAATGAAGATTTTGTTGGCATTAGATCCGAATGGACTATGGTTGATAGAATACTTGCTTCCAGGGTAAACGACGATACCAATGAATATCTTGTCAAATGGAAAGACCTTCCATACGACGAGTGCCACTGGGAGATGGAATCTGCTATCTCTGCTTTTCAAGCAGAAATAGAAAGATTCAATAAATTTCAGTCCAGAACAAGGAAGGTTTTGGATGCTTCTGAATCAGAAAATCTGCAGAAAGAATTTCTGCAGTATGAACACAGCCCCGAGTTTCTTTCAGGTGGTTCACTGCATCCATATCAACTTGAAGGATTGAACTTCTTACGATTTTCATGGTCCAAGCAAACCCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATTCAGAGCATTGCGTTTTTAGCATCGCTCTTTGAAAGTAAAGTTTCACCACATCTGGTGATTGCCCCGCTCTCAACGTTGAGAAACTGGGAGCGTGAATTTGCAACGTGGGCACCTCAGATGAATGTTGTTATGTATTTTGGATCTGCCAACGCTCGTGCTTTGATACGAGAGTATGAGTTTTACTTTCCCAAGAACCAAAAGGGGTTCCAGAGAAAGAAATCCAAACAGCTTGTTGGTGAAACCAAACAAGGAAGAATAAAGTTTGATGTTCTTTTGACATCATATGAGATGATAAACTGTGATTTATCATCTCTGAAACCTATCAAGTGGGAGTGCCTGATAGTTGATGAGGGTCACCGTCTGAAAAACAAGAATTCAAAATTGTTTTCTTCGTTGACCCAACTTTCCAGCAAACACCGTGTGCTTTTGACTGGAACTCCTCTTCAGAACAATTTGGATGAACTTTTTATGCTGATGCACTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTTCAGGAAGAGTTTAAGGATATCAATAGAGAGGAGCAGATTCTGAGACTGCATAAAATGTTGGCACCGCATCTGTTACGAAGATTGAAGAAAGATGTGATGACAGAACTGCCTCCAAAAAAGGAACTTATTTTACGTGTTGAATTATCCAGTATGCAGAAAGAATACTACAAGGCAATTCTGACTCGTAATTATCCGATATTAACCCGCCGAGCTGGTATTTCTCTTATCAACGTTGTTATGGAACTGCGTAAGCTCTGCTGCCATCCCTTTATGTTTGATGGACTTCAACCTGATCTTAATATTAATGATGAAAAAGCTCCATTTGACTATTTGCTTGAATCCTGTGGGAAGTTGCAACTGTTAGACAAGATGATGGTGAAACTGAAAGAGCAAGGTCATAGAGTCCTTATATATTCTCAATTTCAGAAAATGTTGGACTTGCTTGGAGATTACTGCTGTTACAGGAGTTGGCAATTTGAGAGGATAGATGGGAAGGTTGGAGGAGCTGAAAGACAATTCAATAATTTTTTCCTGCGACTTACTGATCCGACTGGCAACTGCAGTGATTGGAATCCTCATGCTGACTTGCAAGCCATGGCTCGGTCGCACCGCCATGGACAAAAAAAGAAGGTGATGATTTATAGGCTCATAGCAAGAGGAACCATTGAAGAGAGGATGATTCAGCTGACAAAGAAGAAAATGGTGTTGGAACACCTGGTTGTAGGGAGGCTACAGGCTGAAAACATTAAGCAGGAAGAGTTAGATGATATAGTAAGGTATGGCGCTGAGGAGTTATTTGCTGATGAAAATGATGAAGCAAGCAAGTCTCGTCAAATTCATTATGATGATGATGCTATAGACAGATTGCTGGATCGTGATGGAGCTGGAGGTGAAGATGCTGGTTTGGATGGTGAAGATGAAGATGGATTTCTGAAGGCTTTTAAGGTGGCAAACTTCGAATACATAGACGAAGTTAAGCCAGCAGAGGAGGTGGCACAAAAAGAATCAGAGGAGAATCAATCCTCTGCTGCCAATTTGAAGAAATCTGCTTACTGGGATGGCTTGTTGCAAAGAGGATATGAACAGTGCAGAATTGAAGAATTAGATGCCTTAGGCAAAGGGAAGCGAATCCGCACCAAATGGCTGGGGGAAGGTTGTAGTAACTGGGGAGATCTAAGCTCAGATGATGAAAATTATGAAGCGGATCATAGTGAAGATGATTCAAATTCATTTGAGACTCCTACTCCTTCTAGAAGAGGAAAGAAAATTCGCGCAGAGAACCCAGAGCCACATCCTTTAATGGAAGGTCAAGGAAAATCGTTGAAAGTACTTGGCTTTAGTCAAAATCAACGGGCCGATTTTCTTCAAATTTTGATGAGGTTTGGGGTTGGTGATTATGATTGGAAACAGTTTGCTCCCAGGATTAAACACAAGAGTTATAAAGAAATCACGGAGTATGGCAACCTTCTTTTGTCTCATATTGCAGAAGATATTACTGATTCACCAACATTCACAGATGGCGTTCCAAAAGAAGGACTTCGAATACCAGATATACTTGTAAGGATTGCACTTCTGCTTATGATATCAGATAAAGTGAAGTTTGTATCAGAAAATCCTGGAATTGAACTTTTTTCATCTGATGTCTTAATACGCTATCCACGTTTGAAGGGTACACAGTTCTGGAAGATGGATCATGATTTAGTGCTACTGCAGGCCGTGTTGAAGTGGCATGATATTATCAAGGATAAGGATCTGCAGATTCAGACGGTCATCTGTCAGGAGTTGAATATTGCAGTTGAAGATGTAGCAGTTGAAGTACAGTCTGACTCACGAATGCTCCATGGTCCAAATATTACAAATGTGGAGCCTAGCACGAGCTTCAACCAATCTAAGCAGAGTGATTTGTGTGGTTCTAGTGATCGTGGGAGGCAAATCCAGTCACATCATCAATCCGCCACGAGGGATGAGAATAAACAAATCAAGAGAGCACGTATTGAGTTTATCAAACGAAGGCTTCGTCTCTTGGAAAAAGGTCTCATCGCTGAGTACCAGAATGAACGCTTTAGTGAACTCAAAGCACAGGAGGAAGAAAATAAACTAGATGAAGGCAACTCCACGCGTGTTAATGTGAACAAGTATATAGTTAAAGGCAAGTCCATATTCTATACAGATGAACTGTATAATTACTTATATGATTTTGATGCAGATCGTATGCAACTACTGTCTCTTTACAATGAGATGTGCCAGACTGTGGAGGGCAGCGCCGCCGGTTTAGCAGAAAATGCAACAGAACAGCAACAACTCAAAGCTATTAAGAACTTGGGTCAAATCCAAAGCATTTGTGCAGATATCAATGAAATTCTACGTTATGAGTAA 3996 0.4079 MITEPCMASDEKMSSSIQLRERSSSRPRYNFDGSEDEDQVIFHREHGKSAENDVKVNGDDTNVGGSVEGLRGSSSQKRKNIIDDGNESVILPRKRGRPRKSITKSDTTETNVNSFADRLRERSIKKPNYIVDQSDEDLDIFPRKHGNPIVQIERSDTVSPLSGIDKILDCEMRPVVAAESDAQKLESKHYLVKWKGLSYLHCTWVPEGEFLKAFKTQPGLKIRINSLHRRIESAKNFNEDFVGIRSEWTMVDRILASRVNDDTNEYLVKWKDLPYDECHWEMESAISAFQAEIERFNKFQSRTRKVLDASESENLQKEFLQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFESKVSPHLVIAPLSTLRNWEREFATWAPQMNVVMYFGSANARALIREYEFYFPKNQKGFQRKKSKQLVGETKQGRIKFDVLLTSYEMINCDLSSLKPIKWECLIVDEGHRLKNKNSKLFSSLTQLSSKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINREEQILRLHKMLAPHLLRRLKKDVMTELPPKKELILRVELSSMQKEYYKAILTRNYPILTRRAGISLINVVMELRKLCCHPFMFDGLQPDLNINDEKAPFDYLLESCGKLQLLDKMMVKLKEQGHRVLIYSQFQKMLDLLGDYCCYRSWQFERIDGKVGGAERQFNNFFLRLTDPTGNCSDWNPHADLQAMARSHRHGQKKKVMIYRLIARGTIEERMIQLTKKKMVLEHLVVGRLQAENIKQEELDDIVRYGAEELFADENDEASKSRQIHYDDDAIDRLLDRDGAGGEDAGLDGEDEDGFLKAFKVANFEYIDEVKPAEEVAQKESEENQSSAANLKKSAYWDGLLQRGYEQCRIEELDALGKGKRIRTKWLGEGCSNWGDLSSDDENYEADHSEDDSNSFETPTPSRRGKKIRAENPEPHPLMEGQGKSLKVLGFSQNQRADFLQILMRFGVGDYDWKQFAPRIKHKSYKEITEYGNLLLSHIAEDITDSPTFTDGVPKEGLRIPDILVRIALLLMISDKVKFVSENPGIELFSSDVLIRYPRLKGTQFWKMDHDLVLLQAVLKWHDIIKDKDLQIQTVICQELNIAVEDVAVEVQSDSRMLHGPNITNVEPSTSFNQSKQSDLCGSSDRGRQIQSHHQSATRDENKQIKRARIEFIKRRLRLLEKGLIAEYQNERFSELKAQEEENKLDEGNSTRVNVNKYIVKGKSIFYTDELYNYLYDFDADRMQLLSLYNEMCQTVEGSAAGLAENATEQQQLKAIKNLGQIQSICADINEILRYE 1331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02674 1331 SMART DUF1087_2 866 942 IPR009463 -
Vimu1g02674 1331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 314 567 IPR027417 -
Vimu1g02674 1331 MobiDBLite consensus disorder prediction 937 977 - -
Vimu1g02674 1331 MobiDBLite consensus disorder prediction 1154 1197 - -
Vimu1g02674 1331 CDD CD2_tandem 247 298 - -
Vimu1g02674 1331 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 10 1286 - -
Vimu1g02674 1331 MobiDBLite consensus disorder prediction 1154 1186 - -
Vimu1g02674 1331 Coils Coil 537 557 - -
Vimu1g02674 1331 Pfam CHD subfamily II, SANT-like domain 959 1086 IPR009462 GO:0003677|GO:0006338
Vimu1g02674 1331 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 346 532 IPR014001 -
Vimu1g02674 1331 SMART ultradead3 330 543 IPR014001 -
Vimu1g02674 1331 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 569 805 IPR027417 -
Vimu1g02674 1331 Gene3D - 154 240 - -
Vimu1g02674 1331 SUPERFAMILY Chromo domain-like 239 299 IPR016197 -
Vimu1g02674 1331 Gene3D - 574 716 IPR027417 -
Vimu1g02674 1331 Gene3D - 727 840 IPR027417 -
Vimu1g02674 1331 ProSiteProfiles Chromo and chromo shadow domain profile. 162 239 IPR000953 -
Vimu1g02674 1331 MobiDBLite consensus disorder prediction 1 86 - -
Vimu1g02674 1331 CDD SF2_C_SNF 655 757 - -
Vimu1g02674 1331 Pfam Chromo (CHRromatin Organisation MOdifier) domain 250 298 IPR023780 -
Vimu1g02674 1331 Pfam Chromo (CHRromatin Organisation MOdifier) domain 176 212 IPR023780 -
Vimu1g02674 1331 SMART chromo_7 247 301 IPR000953 -
Vimu1g02674 1331 SMART chromo_7 161 219 IPR000953 -
Vimu1g02674 1331 ProSiteProfiles Chromo and chromo shadow domain profile. 249 311 IPR000953 -
Vimu1g02674 1331 SMART DUF1086_2 939 1089 IPR009462 GO:0003677|GO:0006338
Vimu1g02674 1331 Gene3D - 299 569 IPR038718 -
Vimu1g02674 1331 MobiDBLite consensus disorder prediction 25 55 - -
Vimu1g02674 1331 MobiDBLite consensus disorder prediction 9 24 - -
Vimu1g02674 1331 CDD CD1_tandem 164 215 - -
Vimu1g02674 1331 Gene3D - 241 298 - -
Vimu1g02674 1331 Pfam SNF2-related domain 354 632 IPR000330 GO:0005524|GO:0140658
Vimu1g02674 1331 SUPERFAMILY Chromo domain-like 155 212 IPR016197 -
Vimu1g02674 1331 Pfam CHD subfamily II, DUF1087 868 918 IPR009463 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02674 Vimu-Chr1 38619354 38631981 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02674 356 797 RAD5 or RAD16-like Gene Family AT1G02670 25.000 4.08e-21 97.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vimu1g02674 SNF2_N 1.3e-63 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02674 K11643 - gmx:100790230 1469.91
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02674 1 38619354 38631981 Vimu10g03016 10 41048738 41055334 PCT