Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vimu1g02674 | ATGATTACTGAACCGTGCATGGCTTCTGATGAGAAAATGAGTAGTTCAATTCAGCTTCGTGAAAGATCGAGTTCCAGACCCCGATATAACTTTGATGGGTCAGAAGATGAAGATCAAGTTATTTTCCATAGAGAACATGGAAAATCTGCAGAAAACGATGTGAAAGTTAATGGAGATGATACTAATGTTGGTGGCTCGGTTGAAGGGCTTCGTGGAAGCTCCAGTCAAAAAAGGAAAAATATTATCGATGATGGTAATGAGTCCGTTATTCTCCCTAGGAAACGAGGGAGACCAAGAAAAAGCATTACTAAAAGTGATACAACTGAAACTAATGTGAATAGTTTTGCTGATCGGCTACGAGAAAGATCTATAAAGAAGCCTAATTACATTGTTGATCAGTCAGATGAAGATTTGGATATTTTCCCCAGAAAACATGGGAACCCCATCGTCCAAATCGAACGAAGTGACACTGTTAGCCCACTCAGTGGCATTGATAAGATATTAGATTGTGAGATGCGTCCTGTGGTGGCTGCTGAAAGTGACGCACAAAAGTTGGAGTCGAAACACTATCTTGTTAAGTGGAAGGGACTCTCATATTTGCACTGCACATGGGTCCCAGAAGGAGAGTTTTTGAAGGCTTTCAAGACTCAGCCAGGTCTAAAGATCAGAATAAACAGCCTCCATCGTCGTATCGAATCTGCCAAGAATTTTAATGAAGATTTTGTTGGCATTAGATCCGAATGGACTATGGTTGATAGAATACTTGCTTCCAGGGTAAACGACGATACCAATGAATATCTTGTCAAATGGAAAGACCTTCCATACGACGAGTGCCACTGGGAGATGGAATCTGCTATCTCTGCTTTTCAAGCAGAAATAGAAAGATTCAATAAATTTCAGTCCAGAACAAGGAAGGTTTTGGATGCTTCTGAATCAGAAAATCTGCAGAAAGAATTTCTGCAGTATGAACACAGCCCCGAGTTTCTTTCAGGTGGTTCACTGCATCCATATCAACTTGAAGGATTGAACTTCTTACGATTTTCATGGTCCAAGCAAACCCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATTCAGAGCATTGCGTTTTTAGCATCGCTCTTTGAAAGTAAAGTTTCACCACATCTGGTGATTGCCCCGCTCTCAACGTTGAGAAACTGGGAGCGTGAATTTGCAACGTGGGCACCTCAGATGAATGTTGTTATGTATTTTGGATCTGCCAACGCTCGTGCTTTGATACGAGAGTATGAGTTTTACTTTCCCAAGAACCAAAAGGGGTTCCAGAGAAAGAAATCCAAACAGCTTGTTGGTGAAACCAAACAAGGAAGAATAAAGTTTGATGTTCTTTTGACATCATATGAGATGATAAACTGTGATTTATCATCTCTGAAACCTATCAAGTGGGAGTGCCTGATAGTTGATGAGGGTCACCGTCTGAAAAACAAGAATTCAAAATTGTTTTCTTCGTTGACCCAACTTTCCAGCAAACACCGTGTGCTTTTGACTGGAACTCCTCTTCAGAACAATTTGGATGAACTTTTTATGCTGATGCACTTCCTTGATGCTGGAAAGTTTGGAAGTTTAGAGGAGTTTCAGGAAGAGTTTAAGGATATCAATAGAGAGGAGCAGATTCTGAGACTGCATAAAATGTTGGCACCGCATCTGTTACGAAGATTGAAGAAAGATGTGATGACAGAACTGCCTCCAAAAAAGGAACTTATTTTACGTGTTGAATTATCCAGTATGCAGAAAGAATACTACAAGGCAATTCTGACTCGTAATTATCCGATATTAACCCGCCGAGCTGGTATTTCTCTTATCAACGTTGTTATGGAACTGCGTAAGCTCTGCTGCCATCCCTTTATGTTTGATGGACTTCAACCTGATCTTAATATTAATGATGAAAAAGCTCCATTTGACTATTTGCTTGAATCCTGTGGGAAGTTGCAACTGTTAGACAAGATGATGGTGAAACTGAAAGAGCAAGGTCATAGAGTCCTTATATATTCTCAATTTCAGAAAATGTTGGACTTGCTTGGAGATTACTGCTGTTACAGGAGTTGGCAATTTGAGAGGATAGATGGGAAGGTTGGAGGAGCTGAAAGACAATTCAATAATTTTTTCCTGCGACTTACTGATCCGACTGGCAACTGCAGTGATTGGAATCCTCATGCTGACTTGCAAGCCATGGCTCGGTCGCACCGCCATGGACAAAAAAAGAAGGTGATGATTTATAGGCTCATAGCAAGAGGAACCATTGAAGAGAGGATGATTCAGCTGACAAAGAAGAAAATGGTGTTGGAACACCTGGTTGTAGGGAGGCTACAGGCTGAAAACATTAAGCAGGAAGAGTTAGATGATATAGTAAGGTATGGCGCTGAGGAGTTATTTGCTGATGAAAATGATGAAGCAAGCAAGTCTCGTCAAATTCATTATGATGATGATGCTATAGACAGATTGCTGGATCGTGATGGAGCTGGAGGTGAAGATGCTGGTTTGGATGGTGAAGATGAAGATGGATTTCTGAAGGCTTTTAAGGTGGCAAACTTCGAATACATAGACGAAGTTAAGCCAGCAGAGGAGGTGGCACAAAAAGAATCAGAGGAGAATCAATCCTCTGCTGCCAATTTGAAGAAATCTGCTTACTGGGATGGCTTGTTGCAAAGAGGATATGAACAGTGCAGAATTGAAGAATTAGATGCCTTAGGCAAAGGGAAGCGAATCCGCACCAAATGGCTGGGGGAAGGTTGTAGTAACTGGGGAGATCTAAGCTCAGATGATGAAAATTATGAAGCGGATCATAGTGAAGATGATTCAAATTCATTTGAGACTCCTACTCCTTCTAGAAGAGGAAAGAAAATTCGCGCAGAGAACCCAGAGCCACATCCTTTAATGGAAGGTCAAGGAAAATCGTTGAAAGTACTTGGCTTTAGTCAAAATCAACGGGCCGATTTTCTTCAAATTTTGATGAGGTTTGGGGTTGGTGATTATGATTGGAAACAGTTTGCTCCCAGGATTAAACACAAGAGTTATAAAGAAATCACGGAGTATGGCAACCTTCTTTTGTCTCATATTGCAGAAGATATTACTGATTCACCAACATTCACAGATGGCGTTCCAAAAGAAGGACTTCGAATACCAGATATACTTGTAAGGATTGCACTTCTGCTTATGATATCAGATAAAGTGAAGTTTGTATCAGAAAATCCTGGAATTGAACTTTTTTCATCTGATGTCTTAATACGCTATCCACGTTTGAAGGGTACACAGTTCTGGAAGATGGATCATGATTTAGTGCTACTGCAGGCCGTGTTGAAGTGGCATGATATTATCAAGGATAAGGATCTGCAGATTCAGACGGTCATCTGTCAGGAGTTGAATATTGCAGTTGAAGATGTAGCAGTTGAAGTACAGTCTGACTCACGAATGCTCCATGGTCCAAATATTACAAATGTGGAGCCTAGCACGAGCTTCAACCAATCTAAGCAGAGTGATTTGTGTGGTTCTAGTGATCGTGGGAGGCAAATCCAGTCACATCATCAATCCGCCACGAGGGATGAGAATAAACAAATCAAGAGAGCACGTATTGAGTTTATCAAACGAAGGCTTCGTCTCTTGGAAAAAGGTCTCATCGCTGAGTACCAGAATGAACGCTTTAGTGAACTCAAAGCACAGGAGGAAGAAAATAAACTAGATGAAGGCAACTCCACGCGTGTTAATGTGAACAAGTATATAGTTAAAGGCAAGTCCATATTCTATACAGATGAACTGTATAATTACTTATATGATTTTGATGCAGATCGTATGCAACTACTGTCTCTTTACAATGAGATGTGCCAGACTGTGGAGGGCAGCGCCGCCGGTTTAGCAGAAAATGCAACAGAACAGCAACAACTCAAAGCTATTAAGAACTTGGGTCAAATCCAAAGCATTTGTGCAGATATCAATGAAATTCTACGTTATGAGTAA | 3996 | 0.4079 | MITEPCMASDEKMSSSIQLRERSSSRPRYNFDGSEDEDQVIFHREHGKSAENDVKVNGDDTNVGGSVEGLRGSSSQKRKNIIDDGNESVILPRKRGRPRKSITKSDTTETNVNSFADRLRERSIKKPNYIVDQSDEDLDIFPRKHGNPIVQIERSDTVSPLSGIDKILDCEMRPVVAAESDAQKLESKHYLVKWKGLSYLHCTWVPEGEFLKAFKTQPGLKIRINSLHRRIESAKNFNEDFVGIRSEWTMVDRILASRVNDDTNEYLVKWKDLPYDECHWEMESAISAFQAEIERFNKFQSRTRKVLDASESENLQKEFLQYEHSPEFLSGGSLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFESKVSPHLVIAPLSTLRNWEREFATWAPQMNVVMYFGSANARALIREYEFYFPKNQKGFQRKKSKQLVGETKQGRIKFDVLLTSYEMINCDLSSLKPIKWECLIVDEGHRLKNKNSKLFSSLTQLSSKHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINREEQILRLHKMLAPHLLRRLKKDVMTELPPKKELILRVELSSMQKEYYKAILTRNYPILTRRAGISLINVVMELRKLCCHPFMFDGLQPDLNINDEKAPFDYLLESCGKLQLLDKMMVKLKEQGHRVLIYSQFQKMLDLLGDYCCYRSWQFERIDGKVGGAERQFNNFFLRLTDPTGNCSDWNPHADLQAMARSHRHGQKKKVMIYRLIARGTIEERMIQLTKKKMVLEHLVVGRLQAENIKQEELDDIVRYGAEELFADENDEASKSRQIHYDDDAIDRLLDRDGAGGEDAGLDGEDEDGFLKAFKVANFEYIDEVKPAEEVAQKESEENQSSAANLKKSAYWDGLLQRGYEQCRIEELDALGKGKRIRTKWLGEGCSNWGDLSSDDENYEADHSEDDSNSFETPTPSRRGKKIRAENPEPHPLMEGQGKSLKVLGFSQNQRADFLQILMRFGVGDYDWKQFAPRIKHKSYKEITEYGNLLLSHIAEDITDSPTFTDGVPKEGLRIPDILVRIALLLMISDKVKFVSENPGIELFSSDVLIRYPRLKGTQFWKMDHDLVLLQAVLKWHDIIKDKDLQIQTVICQELNIAVEDVAVEVQSDSRMLHGPNITNVEPSTSFNQSKQSDLCGSSDRGRQIQSHHQSATRDENKQIKRARIEFIKRRLRLLEKGLIAEYQNERFSELKAQEEENKLDEGNSTRVNVNKYIVKGKSIFYTDELYNYLYDFDADRMQLLSLYNEMCQTVEGSAAGLAENATEQQQLKAIKNLGQIQSICADINEILRYE | 1331 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vimu1g02674 | 1331 | SMART | DUF1087_2 | 866 | 942 | IPR009463 | - | |
| Vimu1g02674 | 1331 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 314 | 567 | IPR027417 | - | |
| Vimu1g02674 | 1331 | MobiDBLite | consensus disorder prediction | 937 | 977 | - | - | |
| Vimu1g02674 | 1331 | MobiDBLite | consensus disorder prediction | 1154 | 1197 | - | - | |
| Vimu1g02674 | 1331 | CDD | CD2_tandem | 247 | 298 | - | - | |
| Vimu1g02674 | 1331 | PANTHER | CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED | 10 | 1286 | - | - | |
| Vimu1g02674 | 1331 | MobiDBLite | consensus disorder prediction | 1154 | 1186 | - | - | |
| Vimu1g02674 | 1331 | Coils | Coil | 537 | 557 | - | - | |
| Vimu1g02674 | 1331 | Pfam | CHD subfamily II, SANT-like domain | 959 | 1086 | IPR009462 | GO:0003677|GO:0006338 | |
| Vimu1g02674 | 1331 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 346 | 532 | IPR014001 | - |
Showing 1 to 10 of 33 entries
Duplication type information
Functional genes information
Transcription factors information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vimu1g02674 | K11643 | - | gmx:100790230 | 1469.91 |
Showing 1 to 1 of 1 entries
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Vimu1g02674 | 1 | 38619354 | 38631981 | Vimu10g03016 | 10 | 41048738 | 41055334 | PCT |
Showing 1 to 1 of 1 entries