Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02673 ATGGCTGCAACTCAGGTTAATGATCCTAGAAGCATAGTTTCTATTTCAAAGATTGTTTCTGTGAATCCAAAACTCGTGCAACCTCAGAGGGTTTTGACTCTTTCAAATTTGGACAGGCAGTGTCCACACCTCATGCACTTGGTGTTCTTCTACAATAACCTGCCTCACCAGAGGTTGAAGGACTTGTCCCTCGATTCAGTGTTCTGCAGCTTGAAATCTGGCTTGGAAGATACCTTGGCTCTGTGGTATCCTGCTGCAGGTAGGCTTTGGCCTAATCAAAGTGATGGCAAGCTCAACCTGTGGTGCAACAACCATGGTGCAGTTCTTGCAGAGGCTGAAACCTCTGCTAAAATCTCACAACTTGGAAACCTCTCTGAGTACAATGAATTCTTTGAGAAGCTGGTTTATAAGCCAGCTTTTGATGGGAATTTCTCAAATATGCCGCTGATTGTTGCTCAGGTCACTAAATTTGGTTGTGGAGGGTACTCAATTGGTATTGGAACAAGCCACTCTTTGTTTGATGGGCCAGCAACCTATGAGTTCTTGCGTGCATGGGCTTCAAATTCAGAAATTGTGAAAGGAAGAAGCAGATCTGATGAGGTTCCAAAGCCAGTGCATGAGAGAGGGATACTTCTGAGAGGTATTCTTGAAGAAGGAAGAGAGACTGGAAATTTTCCTTCAGACACAAGTTCAAATTGTAAAGAAGCAAGGGCCATGGCAGTAGATCACTTATATCATCTTATAATGCAAACAGCTTGTGCACAAAAGGGTTTTCCTCTGCAAATTGGAACAGCCTCGAATTCAAAGAAGTGTGTTCTTAAAACCTATCATGTTTCAGGTGCAATGACAGAAAACTTGAAAAGGAAACATTTCCCCATGCAAAGAGGTTCATTTCCTTTCTCAACCTTTGAGGTTCTTGCAGCTCACCTTTGGAAGGCAAGGAGCAAAGCATTAGGGGTGAAAAAGGAAAAACAAGTATGCCTCCAATTTGCAGTGGACATAAGGAACAAGACGAAACCAGCATTGCCAAAGTGTTTCAGTGGAAATGCATATGTTCTTGCATCGATCATGATGCCAATGGGAGAATTGGAGAATGCAAGCCATGAAAGCATCATTGAGAAAATAAGAGAAGCGAAGAAGAAAGTGAACGAGGATTATGTGAGAAGCTACGTTGAAGCACTAGAAGGAGCAGAACAAGGTTCTTCTCTTCCTCCACTGAAGGAGCTAACTCTGGTTTCTGATTGGACGAGAATGCCTTTTCACAACATTCAGTTCTTCCATGGAAAAGCAAGCTATGCATCCCCTCTTGCCACTCCTATCCCACAGGTCGCTTACTTCATGCAAAGCCCTACTGACAACATGGCCGTCGACGTCAGAATCGGCTTGGAAGCTGAACATATAAGTGCTTTTAATCACTGCTTTCTAACCATGGCCTCATGA 1440 0.434 MAATQVNDPRSIVSISKIVSVNPKLVQPQRVLTLSNLDRQCPHLMHLVFFYNNLPHQRLKDLSLDSVFCSLKSGLEDTLALWYPAAGRLWPNQSDGKLNLWCNNHGAVLAEAETSAKISQLGNLSEYNEFFEKLVYKPAFDGNFSNMPLIVAQVTKFGCGGYSIGIGTSHSLFDGPATYEFLRAWASNSEIVKGRSRSDEVPKPVHERGILLRGILEEGRETGNFPSDTSSNCKEARAMAVDHLYHLIMQTACAQKGFPLQIGTASNSKKCVLKTYHVSGAMTENLKRKHFPMQRGSFPFSTFEVLAAHLWKARSKALGVKKEKQVCLQFAVDIRNKTKPALPKCFSGNAYVLASIMMPMGELENASHESIIEKIREAKKKVNEDYVRSYVEALEGAEQGSSLPPLKELTLVSDWTRMPFHNIQFFHGKASYASPLATPIPQVAYFMQSPTDNMAVDVRIGLEAEHISAFNHCFLTMAS 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02673 479 Pfam Transferase family 19 473 - -
Vimu1g02673 479 Gene3D - 10 214 IPR023213 -
Vimu1g02673 479 Gene3D - 256 476 IPR023213 -
Vimu1g02673 479 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 21 438 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02673 Vimu-Chr1 38609370 38613189 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02673 13 470 Monolignol Biosynthesis Gene Families AT5G48930 24.573 9.51e-37 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02673 K15400 - gmx:100803347 777.319