Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02672 AAGACCCTTTTGCAGAAACTGACTGTGGTGGAAGATCAAGAATATAGAATGGATGATTTCAGAAATGAGTTTCACAAAGGATTGCGTGTTCTTGCTGTTGATGATGACTCAACGTGTCTCAAGATTCTGGAGACTATGTTACAAAAGCACAAATACCATGTAACAGCCACTAAAAATGCACAAACAGCATTGAATCTGTTGAGAGGAAACAAGAACGGATTTGACCTTGTCATCAGCGATGTACAAATGCCAGACATGGATGGATTTAAGTTGCTTGAGCTGGTGGGGCTTGAGATGGACCTACCTGTCATAATGATGTCGGTAGATGATGATTTTAAGATGGTGATGAAGGGAATTAAACATGGAGCTTGTGATTATCTTCTGAAACCTGTGAGACTTAAGGATGTAAAGAATATTTGGCAGCATGTTGCCAGAAGGAGGAGGATGGGTTCAAAGGAGCAGGATAGAAGCAGTAACCAAGACAAAGATAATACTGACAGCAATGAAAGAGGTTCAGTAGCAACAGGAAATTCAGATCAAAATGTAAAGTCTTCCCGAAAGAGAAGGGATGAGGATGACTATGATAATGAGGACCAAGAGAATGACCATGACAATGAGGACTCATCATGTCATAAGAAAGCTCGAGTTGTTTGGAATGCTGAACTGCACCACAAGTTTGTTTCTGCTGTTAACCAATTAGGTTTTGAAAAAGCTGTACCTAAAAAGATTCTTGACTTGATGAATGTTGAAAAGCTTACAAGGGAGAATGTGGCCAGCCACCTTCAGGCATTTTTGGAATCTCACTGTGTCTTTCTATGGCTGCAGAAATATAGGCTTTATCTGAAAAAGATTAACTGTGCGGCGAACCGGCAGGCTAATATGGTTGCAGCATTAGGCACTACAGATCCATCATTTCTGAGAATAGGTTCTCTGAGTGGTGTTGGACATTTGCATTCATTGACTGGTTCTCAACAGTTTCATAACAGTACCTTCAGACCCTTTGGACCTGGTGGAATGGCTGGTAGATTGAACACTTCTGTTGGTTTGAATGTGCATGAAACTCTTCAGTTTGGTCATGCACAAAATTTTCACAAATCTATGCATGATCCACTCAAGTTTCAACCTGCTATAATTGGTGGCAATCAGAATGGAATTCAGGGAGTGCCATTGTCCACTGCTCTTGATCAATTTCAACATAATAAGGGTGTTGGTATTGCTGTTAGTCCGATTCAAAGCATTTCCCCTTTTATTGATGTTGAACCAAATTTTTCAGTGCCAAATAAACTCCCAGATCTGATACCAACATCAACAGTAGGTTGCTCAGCCTCTCCTGTTTTGGACGTATCAAACAATGCTTTGGTATTGAAAGCTGATAGTGAAAACACACAAGGGGGTGGAGTGTTGTTTGGTCAAACTCCATTAGCCTCTCAGAATTCTCAATTCTCACTCCCTTTGCTGGATCAGGGTAGATGCAGTGATATTTGGTCAAATACTGTTCAGTCATCAGGGACAAATTCTTACCCTGCAGGTGAAACTTTTCGAATGAGGAATCTGAATGATGCTTCATCCATTACTTCACTGTCTAATCCATCCCATTATTCACTAAAAGATATGCATTCACAAGGAGTTCTTATTCCAAATAATTCTGGACAAATTACCAATAGTGTGGTGCCATTTCAAGGGTGGGATGACAACAATGATGATAGTACTTTCCCTTCAAATATATTTTGTAACTCAATGGACTCTCTGATTGATACTGATGGCCACACTTCTTTCAACTCAATCTACAATAGAAACACAGACTTCAGTTTCTTTGACCCCTTACTGATGAAACCTGATGGAGTTATTGAAGAAAATACATTGAAACAACAATATGGAGACATCATGAACCATACCAAGTCTCAAAACAATAGTGCCGCTAATAATCTTGGTTCCGTGGAAGAATTTGTCAGTTCAATGATGAAACAGAAACAAGACAATGTGAAATTATTGGAAGGATACTTATGCGACAACAATCTCTCTGACGGGACATCCATTTGA 2040 0.3971 KTLLQKLTVVEDQEYRMDDFRNEFHKGLRVLAVDDDSTCLKILETMLQKHKYHVTATKNAQTALNLLRGNKNGFDLVISDVQMPDMDGFKLLELVGLEMDLPVIMMSVDDDFKMVMKGIKHGACDYLLKPVRLKDVKNIWQHVARRRRMGSKEQDRSSNQDKDNTDSNERGSVATGNSDQNVKSSRKRRDEDDYDNEDQENDHDNEDSSCHKKARVVWNAELHHKFVSAVNQLGFEKAVPKKILDLMNVEKLTRENVASHLQAFLESHCVFLWLQKYRLYLKKINCAANRQANMVAALGTTDPSFLRIGSLSGVGHLHSLTGSQQFHNSTFRPFGPGGMAGRLNTSVGLNVHETLQFGHAQNFHKSMHDPLKFQPAIIGGNQNGIQGVPLSTALDQFQHNKGVGIAVSPIQSISPFIDVEPNFSVPNKLPDLIPTSTVGCSASPVLDVSNNALVLKADSENTQGGGVLFGQTPLASQNSQFSLPLLDQGRCSDIWSNTVQSSGTNSYPAGETFRMRNLNDASSITSLSNPSHYSLKDMHSQGVLIPNNSGQITNSVVPFQGWDDNNDDSTFPSNIFCNSMDSLIDTDGHTSFNSIYNRNTDFSFFDPLLMKPDGVIEENTLKQQYGDIMNHTKSQNNSAANNLGSVEEFVSSMMKQKQDNVKLLEGYLCDNNLSDGTSI 679
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02672 679 PIRSF RR_ARR_type-B 7 675 IPR017053 GO:0003677|GO:0003700|GO:0009736
Vimu1g02672 679 Gene3D - 209 285 - -
Vimu1g02672 679 MobiDBLite consensus disorder prediction 145 210 - -
Vimu1g02672 679 MobiDBLite consensus disorder prediction 145 168 - -
Vimu1g02672 679 Pfam Response regulator receiver domain 30 137 IPR001789 GO:0000160
Vimu1g02672 679 SUPERFAMILY CheY-like 26 153 IPR011006 -
Vimu1g02672 679 SUPERFAMILY Homeodomain-like 210 265 IPR009057 -
Vimu1g02672 679 NCBIfam myb-like DNA-binding domain, SHAQKYF class 213 264 IPR006447 GO:0003677
Vimu1g02672 679 Gene3D - 28 166 - -
Vimu1g02672 679 PANTHER TWO-COMPONENT RESPONSE REGULATOR 28 401 IPR045279 GO:0009736
Vimu1g02672 679 ProSiteProfiles Response regulatory domain profile. 29 144 IPR001789 GO:0000160
Vimu1g02672 679 FunFam Two-component response regulator 209 269 - -
Vimu1g02672 679 SMART REC_2 28 140 IPR001789 GO:0000160
Vimu1g02672 679 CDD REC_typeB_ARR-like 30 144 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02672 Vimu-Chr1 38602581 38606400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02672 22 668 Response Regulator Gene Family AT2G25180 39.398 2.42e-114 354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vimu1g02672 Response_reg 1.7e-23 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02672 - K14491 var:108336977 1156.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02672 1 38602581 38606400 Vimu10g03013 10 41030223 41034668 PCT