Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02668 ATGGAAGGAAGAAGCAAGAAGGAGGCATACTTTTGTGACAGAGCAAGCATCTTCTCTGGTGCTGCAGAGGCACCTCCTAGTCCAAGCACTCCGCTTCAGCATCCACATGAGAAGAAACAGGTATCTGTTGAGGAAGAAGAGGAAGAAAATAAGGAGTCAAAGCATGGTGCTATATTGGATCTAAATGTTTCAGGTGATGATTCTTGCAGTGCAGAAGCACTAGAACTCAATCTCATAACCTGTTTGGATGTGGGGTCATCATCCATTAGTGGCAATTCTTCCTCAGAAATCCCTCTTGCTTCTGATGCTGCTGAGCCAAGAGTCTTCTCTTGCAACTACTGCCACAGAAAATTCTACAGTTCACAAGCACTTGGTGGGCACCAAAATGCACACAAGAGGGAGAGGTCAATAGCAAAGAGAGGCCACAGGTTTGGATCACAGATAATGGCCTTTGGCCTTCCCTTACTGCATAATAACACCCACTATCCAAGCATGGCTTCCCTACCCCTTTATGGTGCTACCAATAGTAGAGGAGGACCTCTTGGAATTCAAGCACACTCCATGATCCAAAAGCCCTCTCATCACCATCATCATGTGAGTGGATTTGGAAACTCTTATGCACACCACCATGGTTGGTCTAGACCCATCATTGACCAACAACCTGGAATAGCAAAACTACCGGTGGCTGATTTTCACAGAACAAAATCAGCATTTTCATCATCACAAACAAGTGTTGGTAGGTTTGAAACGGCTAACACCCTGATGAATTCTTCAGCCAATAAGGAAATCGGTGGATGTGTGGCCGGTGCTGAAACTCGTTTGAAGGGTAATAATCAAGAAGAAATGAAACACCTTGATTTATCCCTCAAGCTCTAA 876 0.4475 MEGRSKKEAYFCDRASIFSGAAEAPPSPSTPLQHPHEKKQVSVEEEEEENKESKHGAILDLNVSGDDSCSAEALELNLITCLDVGSSSISGNSSSEIPLASDAAEPRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGHRFGSQIMAFGLPLLHNNTHYPSMASLPLYGATNSRGGPLGIQAHSMIQKPSHHHHHVSGFGNSYAHHHGWSRPIIDQQPGIAKLPVADFHRTKSAFSSSQTSVGRFETANTLMNSSANKEIGGCVAGAETRLKGNNQEEMKHLDLSLKL 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02668 291 ProSitePatterns Zinc finger C2H2 type domain signature. 111 131 IPR013087 -
Vimu1g02668 291 ProSiteProfiles Zinc finger C2H2 type domain profile. 109 136 IPR013087 -
Vimu1g02668 291 MobiDBLite consensus disorder prediction 21 56 - -
Vimu1g02668 291 MobiDBLite consensus disorder prediction 37 56 - -
Vimu1g02668 291 SUPERFAMILY beta-beta-alpha zinc fingers 106 136 IPR036236 -
Vimu1g02668 291 Gene3D Classic Zinc Finger 98 149 - -
Vimu1g02668 291 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 6 291 IPR044246 GO:0009788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02668 Vimu-Chr1 38571979 38574627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02668 27 291 C2H2 Transcription Factor Family AT5G10970 38.235 2.33e-43 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02668 - - gmx:100809569 375.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02668 1 38571979 38574627 Vimu10g03012 10 41018555 41019304 PCT