Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vimu1g02668 | ATGGAAGGAAGAAGCAAGAAGGAGGCATACTTTTGTGACAGAGCAAGCATCTTCTCTGGTGCTGCAGAGGCACCTCCTAGTCCAAGCACTCCGCTTCAGCATCCACATGAGAAGAAACAGGTATCTGTTGAGGAAGAAGAGGAAGAAAATAAGGAGTCAAAGCATGGTGCTATATTGGATCTAAATGTTTCAGGTGATGATTCTTGCAGTGCAGAAGCACTAGAACTCAATCTCATAACCTGTTTGGATGTGGGGTCATCATCCATTAGTGGCAATTCTTCCTCAGAAATCCCTCTTGCTTCTGATGCTGCTGAGCCAAGAGTCTTCTCTTGCAACTACTGCCACAGAAAATTCTACAGTTCACAAGCACTTGGTGGGCACCAAAATGCACACAAGAGGGAGAGGTCAATAGCAAAGAGAGGCCACAGGTTTGGATCACAGATAATGGCCTTTGGCCTTCCCTTACTGCATAATAACACCCACTATCCAAGCATGGCTTCCCTACCCCTTTATGGTGCTACCAATAGTAGAGGAGGACCTCTTGGAATTCAAGCACACTCCATGATCCAAAAGCCCTCTCATCACCATCATCATGTGAGTGGATTTGGAAACTCTTATGCACACCACCATGGTTGGTCTAGACCCATCATTGACCAACAACCTGGAATAGCAAAACTACCGGTGGCTGATTTTCACAGAACAAAATCAGCATTTTCATCATCACAAACAAGTGTTGGTAGGTTTGAAACGGCTAACACCCTGATGAATTCTTCAGCCAATAAGGAAATCGGTGGATGTGTGGCCGGTGCTGAAACTCGTTTGAAGGGTAATAATCAAGAAGAAATGAAACACCTTGATTTATCCCTCAAGCTCTAA | 876 | 0.4475 | MEGRSKKEAYFCDRASIFSGAAEAPPSPSTPLQHPHEKKQVSVEEEEEENKESKHGAILDLNVSGDDSCSAEALELNLITCLDVGSSSISGNSSSEIPLASDAAEPRVFSCNYCHRKFYSSQALGGHQNAHKRERSIAKRGHRFGSQIMAFGLPLLHNNTHYPSMASLPLYGATNSRGGPLGIQAHSMIQKPSHHHHHVSGFGNSYAHHHGWSRPIIDQQPGIAKLPVADFHRTKSAFSSSQTSVGRFETANTLMNSSANKEIGGCVAGAETRLKGNNQEEMKHLDLSLKL | 291 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vimu1g02668 | 291 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 111 | 131 | IPR013087 | - | |
Vimu1g02668 | 291 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 109 | 136 | IPR013087 | - | |
Vimu1g02668 | 291 | MobiDBLite | consensus disorder prediction | 21 | 56 | - | - | |
Vimu1g02668 | 291 | MobiDBLite | consensus disorder prediction | 37 | 56 | - | - | |
Vimu1g02668 | 291 | SUPERFAMILY | beta-beta-alpha zinc fingers | 106 | 136 | IPR036236 | - | |
Vimu1g02668 | 291 | Gene3D | Classic Zinc Finger | 98 | 149 | - | - | |
Vimu1g02668 | 291 | PANTHER | C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN | 6 | 291 | IPR044246 | GO:0009788 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vimu1g02668 | Vimu-Chr1 | 38571979 | 38574627 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vimu1g02668 | 27 | 291 | C2H2 Transcription Factor Family | AT5G10970 | 38.235 | 2.33e-43 | 147 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vimu1g02668 | - | - | gmx:100809569 | 375.941 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vimu1g02668 | 1 | 38571979 | 38574627 | Vimu10g03012 | 10 | 41018555 | 41019304 | PCT |