Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02660 ATGAGAAAGAGATCGTGGGGGAGGTTCGCAGCAGAGATTAGAGACCCGTTGAAGAAAGCCAGGGTTTGGTTGGGAACCTTCGATTCTGCCGAGGAAGCTGCTCGAGCCTATGACGATGCCGTCGCACGGACTCTCCGGGGTCCCAAGGCCAAAACAAATTTCCCTCTTTCACACCCTTTCTGTCGTTCGATGATGCAACTGCTGATGACGATCTTCATTGCACCGTGCTCTGCCTTTGAACATTGCCATTCAATTTTTGATTTTTTTTTCACCTTGAGTTTTTGTTATTGTTCCGTGGAACAAATTATAATGATGATCAGATGTAAGATTGGGGCAATATGA 342 0.462 MRKRSWGRFAAEIRDPLKKARVWLGTFDSAEEAARAYDDAVARTLRGPKAKTNFPLSHPFCRSMMQLLMTIFIAPCSAFEHCHSIFDFFFTLSFCYCSVEQIIMMIRCKIGAI 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02660 113 Gene3D AP2/ERF domain 1 57 IPR036955 GO:0003700|GO:0006355
Vimu1g02660 113 SUPERFAMILY DNA-binding domain 2 57 IPR016177 GO:0003677
Vimu1g02660 113 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 61 - -
Vimu1g02660 113 SMART rav1_2 2 61 IPR001471 GO:0003700|GO:0006355
Vimu1g02660 113 Pfam AP2 domain 2 40 IPR001471 GO:0003700|GO:0006355
Vimu1g02660 113 ProSiteProfiles AP2/ERF domain profile. 1 55 IPR001471 GO:0003700|GO:0006355
Vimu1g02660 113 CDD AP2 2 57 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02660 Vimu-Chr1 38491880 38492221 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02660 1 57 AP2-EREBP Transcription Factor Family AT1G50640 85.965 6.06e-28 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu1g02660 AP2 4.1e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02660 K09286 - gmx:100795762 109.383