Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02649 ATGTCTGCGGCGGTTTCCTCCGTACCGGCGCCGGAGCCGGAGATGGATGCAAGTTATCTTTATCCACAATTAGCACATGGTTTAAGATCACAATTTGTTGGAGGGAAGCAAGGCCCTGTTTACCCAAGCTTTCCCCTCTCAACCACCCCTGGGTCAGGCCAAACAGATACTGGAAATTCTTTTATGGGTCTACCTTATGGTTCTCCATCCTCGTTACGGTATGATTTTCAGAATATGTCTGATCGCAAGCTTGGCATGTCATCTGGTGATTCTACTAATGCTGTTGGGAATTCTGTTGTTGGTTCTATAGAAAGTGGAACCTTCCGGACATCCGGAGTGGGGTTGATAACAGAAAATTTGATTAACTGTAACCTGCAAAGTTGGGTGAATAATTTTCCTGAGATTTCTTCTAGAGCAATGGTTGGTTTGAATAATAGTAGTAATTTTGTCTTCCATAATATTTGGGGCAGCAATACTGCTACTCAGCACACAGTTCCTGGTGGTACAAAAGCGGCAGAATCTTTTTCTTTTCCAGGTCAGTGCCGAGGTACATACCCTGCATTTGGTCTGAATATTTGCTGCTCAGATATTCACACTACACCAAATATTGCTTCAGAATGGGGCTCACCTAAGTATGCAATTCCTTATATGAGTGGGTGTCCTCGTGTGTTCTGCATGGGAAAAAGTGGCCATCTTCTTCTTAGCCATACAGGGCTTCTTGGTGTTGTGTGCTCATGCCATTGTTCCCACATGTCTGTTCTTAAGTTTTGTGAGCACTCGGGTTTACATGGTGGTGACCCAGGGGATGCTGTTTGTATGGAGAGTGGGGAGACCATTTCACAGTGGCGGAAGCTTTACTTCTTGAAGTTTGGGATTAGGTCTCTGGGGAATGAGAATGGATGGGACTGGCCAGAAGTATTATCAACAACAGGCAGTCCGATGAAATCCAATGCATCCGTGTTTGATATGTCCAAGACTAATTTGTCTCATATTTTGAGTTCATCTGCAGTCATGTCAAGGTCTGGAAAGTCTTCTGACTATGTCATGTTTCCAAATAATGCTCATATGGACAAAAATTTAATTATTGGTACATTGTCCAGAAAACAAGCAACAACAATCCAGGATGGTTGCAACATTCCAATCAAAGGTTTTACTGGTATTTCACAAAACAGCTTTGTTGATTTGTTGAAAAGCCAATTAATGGAATCTAATCTGGCTATGTACACAACTGCACCAAATTTTGGTGGAACTCAACTGGATGATTGTCACCCTATACCTCCTTTCTTGGATTCTCTGAAAAGGAAAGTAAGTTTGTCAACGGTACACTCACCTTTGCAAACACCAACAAACCTTTTAAAAGACCACGATTGCATAAAAAAAAAAGCAAATGGTCTTGTAGGCAGAGATGCGGCTTCATCTAATGTTGACCTTAGGCTTGGTCAACCACCTCAGACAGGAAACCCACTTCCATCATTTGTAGAACCACTGCAGTTTAATGCCCTTGCCAGTACACCAAAATTGCAACCTCAGAAGCAGATGATTAATAATGCAGACCTCAGCAGGGAGGAGGGATTACAGAATAATTTTAGCTATTCTGCTTCTTCATTCAAATTGGTTGAAGAATTGCCTCAGCTTAAACCCAAGAACTATATGTCAGCTGTGAGTAAGGCTTCTGTTAAAGCTAGATCAGAAACACAAAATGTGGCCAAGGGTGTATCATTTTCACCATTTTTGCAAGTCGATGTACCTGGAAGAAAGACACAAGCTAGTGAAAATTTGTGGGCTGATGACAGCCCTAACATGTCTAAGAAACTGTATTCTGATTATGGTCTCACAGGAAGGCAATCAAATAAATCTGTCGTAGGGACCAATAAATATTTGGAAAATAATATAGGGGTGAGCTTTGCCAAAGATTCTGGTGGCAAAAAATATCCGGGATTTGGAATTGGTCAGTTAATGAAATATCCAAGCTCCATGATGAGATCTGTTGGCGGTTATGATAGTTGTATCTCAGTTAACGAAAAGTTGTATGAACCAAATTTTGAATCTAGCTTGCCATCAGATACATTGGTGCGGGCAAATATTTTGCATGGTTCACACAATACGTCTTCTCTTGGGCTAGAAAATTATGTGATGAATCCTCAGACCTCCATTCCATTTAAAGAGATTTTGAAAGGCCCTCCCTATCACGTTTCAGTTTCTGTGTCAAATCAGACTCCGACTTTGCCACAGCAGCAGGCCATTAATAGGGATGCTTATTTTGTTGATGAAAACACGAGGTCGCTTGCTCTGACACAGATACCAGAGTTATCTAAGCAATATCATGCATTGCATTTTAATATGAATCAGAAGCAAGGGGGATCCAGCAGTATTTTGAAAGTTCAGCATTATACTTGTGAGGCTTCAACATCTGAACAGGGAACCTCTTGTGCAACATTGAAATTGCCTCAAAATAGGTGGATATTTGGGAATCATGAGAATACTGTTGGCTTAGAGAAGTTGCCTTCCCTCACAGGCAAGCATAATACTTTTTTAATTTTCCCCATGACTTTTAACTGTGGTATGGACGGATATTATCATTTGTCTGACCTGTCACCAACACCTTTACATTCCAAAGAAAAGGAATCACAATGTAAACATTCTTATGATCTTCAAAATGAAGAGACTTCTTTAAGCCTTGGTATAAACAAAGAATATATCAGATCTAGTGCATGTGAAAAATACTCTGAGCAATCACCAAATATATGTTTGGAAGGCAAGTATCCTTGTCCTGTTCTGATAAACTGTTGCCGAAGCAACTTTTCCTCAGGGATTGAACCCCTTCATAAGAACCTAGGGCAGCAACTTGCTGATCTCAGTGGTGAAACTTCTTTGAAGATGCCTTCAGATTTGTGTAGAAATCTGAATACTTCGAAAACCGGAAATATCCACTTTGAGCAAGATGGGAAGATACTTGGCCAAGACTCTACCATAATTGGCTTTCATGCTCCTCAATGGAGAGATGTGCCCAGTAAGGTCAGGAAAGCAGTTTGTGATGCAACATCTTTAGATCAAACATTTAATGGTTTGGATAAGGAAGCACAATATGGTTTTCAACTTGGAAACATTTCCACAAAACGCTACAAAATAACCACTGATATGGGAGACCTGTCAGAAGAGAAAGAAAATTCTAATGTTTCTTCTGGATGCTCTGCTCCTGTGATTACTCAGGCATCTGTGATGGTGAACAAAATTGATTACTGTACTGATGAAGCTATAGACACTGGCTTTGTCAACAAGATAGATGTTGATGAAGGGTCAGGTATTGATCAAGGCTCCATGTCAGATTTGGTTGAAAGTGAAAGAACCGGTGAGTCTCTGGGCTTGATCTCTGGGAATTATTTGAAAAATGGTTGTTCGAGAGTGTTGAATGATGAATCATGTTGCGATCTACTTGATGATCTTAAACTGTTAGATTCCTTGATATGGAAGAAAGAAAGGAATCAAAATGATTTTGTGCTTTCTGCTAATTGTAAAACCAATCAATCTCAAAAAGTCAAGAGGGGCATCAATGGAAGAAAGCGAAAGAGAAATGTGTTGAAGATTCTGGATGCTTCATTATCTTCTGAATTCCCTTCCTTGTTGCACAATAAGAATAATGAAGATGCTGAGATTTTTAATTCCTCTTCTAGTTTGTCAAAAGAAATGCAAATGCATTCTCTGCGTAGCCTGCAGAAATCATTCAACAAGTCTTCCTTTGTTCAATCTTGTAACACACAAATACAGTCCGCATTTGCATCCAAATTTGTTTCCTGTAAGAATCGTCTGAGCAAGCATCTCATTCATAAAGTTTCCTATGAGTCTCTATCAGATTCTGATGCTGAGTTTCACTCACTGCCTGTAGTTTCTGGAACAAAGAGATTGAGAAAGAATCTCACTTCTGATTTTGAGCAGTTTCATATACAAGAACCATCCAATGAGGAACCTGAAAATGGTAAGTTGAGGCCATTCTTATGCAGGAAGGAAAATGATCATAGAACAAGGCCAGTAGTATGTGGAAAACATGGTGAAATTTGTAAAGAACATTTGGCTGAAGAGGTGCAAAAGCCTGCAAAAATTGTCTCCCTCAAGAAGGTCCTTAAGTCTTCCAAAAGGTGTTTGAGCCACACAAATGGAAAACCTAGACTAACATCAAGAAAGCAATGGAAGAAATTGAGCATTGGAACAGATAGTGGGTCTTGCTGTGGGAACCGTGGTTTAAAAATTAAGGAACACATTGAAACACAAAATACAATAATTTATAATGAAGCAAATGTTGATATGTCCCTGGAAGACTTGGAGAGAGGTAGCGAGCAAGATGCTAAAGCTAAAGCTAAGCAGGGTGTTAGGGTTGGAAATAGAGAAAAACTTCGATTGAAGGTGAAGAACAAGGACATTCGGAAACACCGCAGCATTAATGAGCTCACCGCTAAAGCTCTAGTCAAGGCATGTGTCCTATGTGGTTATGGAGGTGGAGCCATGACTCGAGCAACAATGAGTCATGCGATTGTCAAGAGCCTCCTAAAAGTGTGGAATGGTGAGAAAGATGGCATGCCTAAGCATACAACATCATGTGAATTTTTTGGAAAGGAAATATATGCAATCCCATCCTCAAAGGTTGGTCAAGAAAGTGTTTTAAAGACAAAAATCCGTGATACATCAACAGATCTGATGAAAGTTCAAATATCTACAAATCATATGCAGCATACCCTCACTAGTCTTTCTAATTTTAAGGTACACAACAGCATTACTGCAGGAGTTCTTGATCCAACTGTTAAACAATGGATTCATATGGTTTGTGGTCTTTGGACTCCTGGAACAAGATGCCCAAATGTTGACACCATGAGTGCTTTTGATGTATCTGGTGTTTCGCGTCCCAGGGCAGATGTGGTTTGTTCCATTTGCAATCGATGGGGTGGTTCTTGTATAGAGTGCAGGGTGGCTGATTGCTCTGTCAAGTTTCATCCTTGGTGTGCTCATCAAAAGAACCTGTTGCAAAGTGAGACTGAAGGTATTGATGATGAAAAGATTGGATTTTATGGAAGATGCATGCTTCATGCTATTGAACCTAGATATCTGTCCATGTATGATCCTATTGATGAAATGGGAAATCAAGAAGAAAAGGAATTCACCTCTGCCAGGGTAGAGGGTTACAAGGGAAGAAGATGGGATGGTTTTCAGGATAATCACTGCCAAGGTGGATGCCTTGTTCCTGAGGAGCAGCTTAATGCTTGGATTCACATCAATGGGCAGAAATTATGTTCTCAAGGAGTCATAAAATTCCCCGATTTGGATATGGAGCATGATTGTCGAAAGGAATACTCTCGGTACAAACAAGCAAAGGGATGGAAACACCTTGTTGTGTACAAATCCCGTATACACGCACTTGGTCTTTACACTTCTCGATTAATTTCCCGGGGTGAAGTGGTGGTTGAATATGTTGGTGAAATTGTGGGATTGCGTGTGGCTGATAAAAGGGAGAAGGATTATCAATCTGGAAAGAAACTTCAGTACAAGAGTGCCTGCTACTTCTTCAGGATAGACAAAGAGCATATTATTGATGCCACAAGGAAAGGGGGGATTGCTCGGTTTGTTAACCACTCGTGCCGGGTTGTCTTCTTTGCTGAGAGGGATATATTTCCTGGTGAAGAGATTACGTATGATTACCACTTTAACCACGAGGACGAAGGAAAGATTCCATGCTACTGCAATTCAAAAAATTGCCGGCGCTATATGAACTGA 5760 0.405 MSAAVSSVPAPEPEMDASYLYPQLAHGLRSQFVGGKQGPVYPSFPLSTTPGSGQTDTGNSFMGLPYGSPSSLRYDFQNMSDRKLGMSSGDSTNAVGNSVVGSIESGTFRTSGVGLITENLINCNLQSWVNNFPEISSRAMVGLNNSSNFVFHNIWGSNTATQHTVPGGTKAAESFSFPGQCRGTYPAFGLNICCSDIHTTPNIASEWGSPKYAIPYMSGCPRVFCMGKSGHLLLSHTGLLGVVCSCHCSHMSVLKFCEHSGLHGGDPGDAVCMESGETISQWRKLYFLKFGIRSLGNENGWDWPEVLSTTGSPMKSNASVFDMSKTNLSHILSSSAVMSRSGKSSDYVMFPNNAHMDKNLIIGTLSRKQATTIQDGCNIPIKGFTGISQNSFVDLLKSQLMESNLAMYTTAPNFGGTQLDDCHPIPPFLDSLKRKVSLSTVHSPLQTPTNLLKDHDCIKKKANGLVGRDAASSNVDLRLGQPPQTGNPLPSFVEPLQFNALASTPKLQPQKQMINNADLSREEGLQNNFSYSASSFKLVEELPQLKPKNYMSAVSKASVKARSETQNVAKGVSFSPFLQVDVPGRKTQASENLWADDSPNMSKKLYSDYGLTGRQSNKSVVGTNKYLENNIGVSFAKDSGGKKYPGFGIGQLMKYPSSMMRSVGGYDSCISVNEKLYEPNFESSLPSDTLVRANILHGSHNTSSLGLENYVMNPQTSIPFKEILKGPPYHVSVSVSNQTPTLPQQQAINRDAYFVDENTRSLALTQIPELSKQYHALHFNMNQKQGGSSSILKVQHYTCEASTSEQGTSCATLKLPQNRWIFGNHENTVGLEKLPSLTGKHNTFLIFPMTFNCGMDGYYHLSDLSPTPLHSKEKESQCKHSYDLQNEETSLSLGINKEYIRSSACEKYSEQSPNICLEGKYPCPVLINCCRSNFSSGIEPLHKNLGQQLADLSGETSLKMPSDLCRNLNTSKTGNIHFEQDGKILGQDSTIIGFHAPQWRDVPSKVRKAVCDATSLDQTFNGLDKEAQYGFQLGNISTKRYKITTDMGDLSEEKENSNVSSGCSAPVITQASVMVNKIDYCTDEAIDTGFVNKIDVDEGSGIDQGSMSDLVESERTGESLGLISGNYLKNGCSRVLNDESCCDLLDDLKLLDSLIWKKERNQNDFVLSANCKTNQSQKVKRGINGRKRKRNVLKILDASLSSEFPSLLHNKNNEDAEIFNSSSSLSKEMQMHSLRSLQKSFNKSSFVQSCNTQIQSAFASKFVSCKNRLSKHLIHKVSYESLSDSDAEFHSLPVVSGTKRLRKNLTSDFEQFHIQEPSNEEPENGKLRPFLCRKENDHRTRPVVCGKHGEICKEHLAEEVQKPAKIVSLKKVLKSSKRCLSHTNGKPRLTSRKQWKKLSIGTDSGSCCGNRGLKIKEHIETQNTIIYNEANVDMSLEDLERGSEQDAKAKAKQGVRVGNREKLRLKVKNKDIRKHRSINELTAKALVKACVLCGYGGGAMTRATMSHAIVKSLLKVWNGEKDGMPKHTTSCEFFGKEIYAIPSSKVGQESVLKTKIRDTSTDLMKVQISTNHMQHTLTSLSNFKVHNSITAGVLDPTVKQWIHMVCGLWTPGTRCPNVDTMSAFDVSGVSRPRADVVCSICNRWGGSCIECRVADCSVKFHPWCAHQKNLLQSETEGIDDEKIGFYGRCMLHAIEPRYLSMYDPIDEMGNQEEKEFTSARVEGYKGRRWDGFQDNHCQGGCLVPEEQLNAWIHINGQKLCSQGVIKFPDLDMEHDCRKEYSRYKQAKGWKHLVVYKSRIHALGLYTSRLISRGEVVVEYVGEIVGLRVADKREKDYQSGKKLQYKSACYFFRIDKEHIIDATRKGGIARFVNHSCRVVFFAERDIFPGEEITYDYHFNHEDEGKIPCYCNSKNCRRYMN 1919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02649 1919 PANTHER HISTONE-LYSINE-N-METHYLTRANSFERASE 2 KMT2 FAMILY MEMBER 523 1919 - -
Vimu1g02649 1919 SMART set_7 1790 1902 IPR001214 GO:0005515
Vimu1g02649 1919 Gene3D SET domain 1706 1919 IPR046341 -
Vimu1g02649 1919 Pfam Tify domain binding domain 239 285 IPR032308 -
Vimu1g02649 1919 Pfam PHD-zinc-finger like domain 1598 1673 - -
Vimu1g02649 1919 SMART PostSET_3 1903 1919 IPR003616 -
Vimu1g02649 1919 ProSiteProfiles Post-SET domain profile. 1903 1919 IPR003616 -
Vimu1g02649 1919 SUPERFAMILY SET domain 1751 1915 IPR046341 -
Vimu1g02649 1919 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1579 1693 IPR013083 -
Vimu1g02649 1919 ProSiteProfiles SET domain profile. 1790 1919 IPR001214 GO:0005515
Vimu1g02649 1919 ProSiteProfiles Extended PHD (ePHD) domain profile. 1579 1693 IPR034732 -
Vimu1g02649 1919 CDD ePHD 1600 1683 - -
Vimu1g02649 1919 Pfam SET domain 1803 1895 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02649 Vimu-Chr1 38287002 38305342 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02649 1792 1915 C2H2 Transcription Factor Family AT2G23740 31.447 2.36e-13 73.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Vimu1g02649 SET 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02649 - - gmx:100816713 1954.49