Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02636 ATGGGACAAATGAAAAATACCCCAACCATGATGGCGCTTACCTTTGTTGAAGAACTCGCCATTTCTGAACCAAGAGATCGAACAACCCACGAAGATGGAAGAAATGACACACCAACAACACCGACGACAAACAATGGCGACCACGGCAATGTTGGCGAACACAAGACGACCAAAACGAACACCACACACTCGTCGGAGGAATGCGGAAATGAGATGAGCAAAGGGAGGTTACGAGAAATGAGAAGGAAGAAAGCTTGGGGTCTCAAACTGATGAAGGGCACAAAAGGAAATCACATTTTGAAACCTCAGCCTGCATTAGAGAAAAAGGAGAGGAGCCGCATGAGAGAAAAAGGAGAGGAGGACGACGTGATGATATCAGAAACTGCAATGTCGCGAAGGTGCGCTGAACCGATTGACGTTTCATTTCCTGTCAGGGAAGTAGATGATGGTTGTGAAGGGGCACCAACGTCCCCAGCACAAGCGACGTCAATGGCGCAGGAAAAGTCTGTCTTCTTGCCTACCTCATTACAATGGATGTCGGTTGAGGACGGAGCAAACAGAGAGCATATTCATGGTGGTGGTGCTACTTCTACTCCCCAAAATTCATGGATAAAACTCGCCTGTGAGAAGATTTCTTGTACATTCGGGGACGGCTTCTGCTATTTCGACTCTTCTAGCCAGAAGCTTCAATGCTCGTTTGCTTATCTCCACCATGGGTGTGAGATGAAGATTTTGCATTTTGATATCAAACCACATAACATCTTACTAGATGAAAACTTTATCCCAAAGATTTCTGACTTTAGATTGGCAAAGTTATATCCAGTAGAAAATAACATTGTCTCAGTGACTGCAGCAAGAGGAACCATTGGATATATGGCTCCAGAGTTGTTCTATAATAATATTGGAGGAATATCTAATAAGACTGATGTTTATAGTTTTGGAATGCTTTTGATGGAGATGGCAAGTAAGAGAAAGAATTTAAACCCCTATGCTGAACATTCAAGTCAACTTTACTTTCCTCTTTGGTTTTATAATCACATTAGAGAAGAGGAAATTATTGAAATGGAAGATTTGACAGAAGATGAAAAGACAATAGTAAAGAAGATGATTATAGTGGCACTATGGTGTATACAATTGAAACTAAATGATCGTCCCTCAATGAATAAAATAGTGGAAATGCTTGAAGGAGAGGTTGAAGACTTAGAAATGCCTCCAAAACCTATTCTATATCCAGATGAAACAGTGACAGAGGATCAAACAATCAACTCCAACTAG 1275 0.4149 MGQMKNTPTMMALTFVEELAISEPRDRTTHEDGRNDTPTTPTTNNGDHGNVGEHKTTKTNTTHSSEECGNEMSKGRLREMRRKKAWGLKLMKGTKGNHILKPQPALEKKERSRMREKGEEDDVMISETAMSRRCAEPIDVSFPVREVDDGCEGAPTSPAQATSMAQEKSVFLPTSLQWMSVEDGANREHIHGGGATSTPQNSWIKLACEKISCTFGDGFCYFDSSSQKLQCSFAYLHHGCEMKILHFDIKPHNILLDENFIPKISDFRLAKLYPVENNIVSVTAARGTIGYMAPELFYNNIGGISNKTDVYSFGMLLMEMASKRKNLNPYAEHSSQLYFPLWFYNHIREEEIIEMEDLTEDEKTIVKKMIIVALWCIQLKLNDRPSMNKIVEMLEGEVEDLEMPPKPILYPDETVTEDQTINSN 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02636 424 MobiDBLite consensus disorder prediction 35 68 - -
Vimu1g02636 424 Pfam Protein kinase domain 231 392 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02636 424 SMART serkin_6 66 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02636 424 PANTHER RUST RESISTANCE KINASE LR10-RELATED 233 414 IPR045874 GO:0004672
Vimu1g02636 424 MobiDBLite consensus disorder prediction 405 424 - -
Vimu1g02636 424 SUPERFAMILY Protein kinase-like (PK-like) 232 395 IPR011009 -
Vimu1g02636 424 ProSiteProfiles Protein kinase domain profile. 37 409 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02636 424 Gene3D Transferase(Phosphotransferase) domain 1 227 403 - -
Vimu1g02636 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Vimu1g02636 424 MobiDBLite consensus disorder prediction 23 77 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02636 Vimu-Chr1 38111961 38116630 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02636 235 415 Receptor kinase-like Gene Family AT5G38280 48.387 2.41e-55 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g02636 Pkinase 1.3e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02636 - - vra:106763727 328.561