Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02632 ATGACTGAAGGTTTGAAAGAAAAGTTAGGTGAAGGAGGATTTGGCTCTGTGTTTAAGGGAAAGTTGTGCAGTGGACCTTTTGTGGCAATCAAAATGTTAGGTAAAGCCAAAGGAAATGGACAAGATTTTATCAATGAAGTTGCAACCATTGGAAGAATACATCATCAAAATGTGGTACACTTAATTGGATTTTGTGTTAGTGGCTCAAAGCGCGCTCTTGTGTATAAATTCATGTCCAATGGTTCTCTTGATAAACTTATATTTTCAAAAGAAGGAAGTGTACAATTAAGCTATGAAAATATATACAATATATCAGTTGGAGTGGCTCGTGGGATTGCTTATCTTCATCATGGATGTGAGATGAAGATTTTGCATTTTGATATCAAACTACATAACATCTTACTAGATGAAAACTTTATCCCAAAGATTTCTGACTTTGGATTGGCAAAGTTATATCCAATAGAAAATAGTATTGTTTCAGTGACTGCAGCAAGAGGAACCATTGGATATATGGCTCCAGAATTGTTTTACCAAAATATTGGAGGAATTTCCCATAAGGCCGATGTTTATAGTTTTGGAATGCTTTTGATGGAGATGGCAAGCAAGAGGAAGAACCTAAATCCCCATGCGGATAGATCAAGTCAAATTTACTTTCCATTTTGGATCTATGATCGTATTAGAGAAGAGGAAGATATAGATATACAAGATTTGACTGAAGAGGAAAAGAAAATAGCAAAAAAGATTATCATAGTTACACTTTGGTGTATACAATTGAAACCAAATAATCGTCCCTCAATGAATAGAGTGATAGAAATGCTTGAAAGAAATATTGAAGACCTGGAAATACCTCCAAAATCTACTTTATATCCTGATTAA 876 0.3425 MTEGLKEKLGEGGFGSVFKGKLCSGPFVAIKMLGKAKGNGQDFINEVATIGRIHHQNVVHLIGFCVSGSKRALVYKFMSNGSLDKLIFSKEGSVQLSYENIYNISVGVARGIAYLHHGCEMKILHFDIKLHNILLDENFIPKISDFGLAKLYPIENSIVSVTAARGTIGYMAPELFYQNIGGISHKADVYSFGMLLMEMASKRKNLNPHADRSSQIYFPFWIYDRIREEEDIDIQDLTEEEKKIAKKIIIVTLWCIQLKPNNRPSMNRVIEMLERNIEDLEIPPKSTLYPD 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02632 291 Gene3D Transferase(Phosphotransferase) domain 1 79 283 - -
Vimu1g02632 291 PANTHER RUST RESISTANCE KINASE LR10-RELATED 1 286 IPR045874 GO:0004672
Vimu1g02632 291 ProSitePatterns Protein kinases ATP-binding region signature. 9 31 IPR017441 GO:0005524
Vimu1g02632 291 Gene3D Phosphorylase Kinase; domain 1 9 78 - -
Vimu1g02632 291 ProSiteProfiles Protein kinase domain profile. 3 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02632 291 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Vimu1g02632 291 SMART serkin_6 3 273 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02632 291 FunFam PR5-like receptor kinase 78 285 - -
Vimu1g02632 291 Pfam Protein kinase domain 6 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02632 291 PIRSF ILK 5 283 - -
Vimu1g02632 291 SUPERFAMILY Protein kinase-like (PK-like) 6 274 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02632 Vimu-Chr1 38058178 38059053 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02632 1 289 Receptor kinase-like Gene Family AT5G38260 51.195 1.68e-101 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vimu1g02632 Pkinase 5.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02632 - - gmx:121173411 489.574