Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02615 ATGTCCAAAGAAGTTGTTGATGATCCTTCAGCTGCTCCTTTTGAGTTTGAGATCTTGGATAGTGATTCTTACATTGTTAGATCTGTTAGAGCCTCAACTAATCGTGCAAATCCGTGGATTGAACCTGAAAGGCTGAAACTTAGACACAGAATTGGTAGAGGCATCTTTGGTGATGTTTGGTTAGCAACTCATCATCAGTCAACTGAAGATTACGATGAGTACCATGAAGTTGCTGCAAAGATGTTACATGCAATTGGAGAGGATCACATGAAGACTGTTATAGAGAAGTTCAATGAATTGTATTTTAAGTGCCAAGGAGTTGCTAGCATGTCCTGGCTGCATGGAATTTCCATCTTAGAAGGAAGGATATGCATCATTATGAATTTTTACGTGGGTTCAATTGGTGACAAGATAGCAAGACTCAAAGAAGGAGGGATTTCATTACATAATGTTTTAAGGTATGGAGTCAATCTGGCTCAAGCTGTTCTGGAACTTCACTCTCTAGGGATCCTCATTCTTAACCTTAAACCATTCAATGTTGTTCTCAATGAGAACGATCAAGCAATTTTAGGAGATTTTGGAATTCCTAGTCTTTTGCTTGAATCCTCATTCTTAAGCAGAGATATGGATAAGAGGCTTGGAACACCAAATTACATGGCTCCAGAGCAATGGGAACCTGAGGTCAGAGGTCCTATATCATTTGAAACAGATTCTTGGGGGTTTGGTTGTACCATTGTCGAAATGTTGACTGGTAATCAACCTTGGTATGGATGTCCTGTTCCCAGAATATACCAGTCAGTTGTTGAAAAGCATGAAAAACCCAATATTCCTAGTGGCCTTCCTTCTTCAATTGAGAATATCCTCAGTGGATGCTTTGAGTATGATTTGAGGAATCGCCCTTTAATGGTGGATATTCTGAGTGTCTTTCAAAGTGCTCTGAATGAATTGGTCAATGATGGAGAATGGAGATATCTGGGAAATGTGAAAGTTAATCCAAAATCAGATAGCACTGGCTACACAGAGTGGTTCCTCTCAAAGGATCATCTTCAGGTGGGTGACATGGTCCGAACTAGAAAGCTTCCCAATTCATGCAGACCTCAAAACATGGACATCCCAGAAGGAACTGTTGTCAGTTTAGAGTCTAACACAGATCAGAGGTTCGCCTTTGTGAGGGTCCATGGCAATGACGACCCTATCAGAATTCATGTATCATCCCTTGAACGTGTCACGTCTGGATTGGTAGCTGGTGATTGGGTATGTTTGAGGGAAGAAAACGAGAAGCACTCACATGTAGGCATTCTACATGCCATCAACCGTGAAGGTAGTGTATCTGTTGGATTTCTTGGGCTGCAAGCTCTCTGGGATGGAAACTCTTCTGAAGTGGAAAAGGTGGAACCTTTCTGTGTTGATCAGTTTGTGAGACTCAAAGACACTGTTTCGTGTCCTCGATTTGAGTGGCGTCGCAAAAGAGGCGGCGCCTGGGCTGCTGGCAGGATCTCATGGATTCTTCCGAATGGAGGTTTGGTTGTGAAGTTCCCAGGGATGCTTCCTTTTGGCAATGAAGCAAACACCTACTTGGCTGATCCCTCTGAGGTTGAAGTGGTTGAGTTCAGGACTTGTCCAGGGATCATAGAAAAGTATGAACATTTAGAGGATCATCACTGGGCAATTAGACCAGTTCTGGTTGCATTTGGTCTATTCACTGCTTTCAAATTTGGCATACTTGTTGGAAAGAAAGTGAGGAGGAACAACAAGGTCAATGCAGTAGAAATTGAAAGTCATCATCAGAATGCCAATTCTGCTACAACAATTTCTACCACCACAATGAGATCTTCAAATGCTGCAAAACAAGGCAATGGAACATGGGTTCCTTCAGTTTTTGCAAGTATATTTTTTAAGGAAGTTGGTAACTCATCCAACGGTCGGTAG 1929 0.4209 MSKEVVDDPSAAPFEFEILDSDSYIVRSVRASTNRANPWIEPERLKLRHRIGRGIFGDVWLATHHQSTEDYDEYHEVAAKMLHAIGEDHMKTVIEKFNELYFKCQGVASMSWLHGISILEGRICIIMNFYVGSIGDKIARLKEGGISLHNVLRYGVNLAQAVLELHSLGILILNLKPFNVVLNENDQAILGDFGIPSLLLESSFLSRDMDKRLGTPNYMAPEQWEPEVRGPISFETDSWGFGCTIVEMLTGNQPWYGCPVPRIYQSVVEKHEKPNIPSGLPSSIENILSGCFEYDLRNRPLMVDILSVFQSALNELVNDGEWRYLGNVKVNPKSDSTGYTEWFLSKDHLQVGDMVRTRKLPNSCRPQNMDIPEGTVVSLESNTDQRFAFVRVHGNDDPIRIHVSSLERVTSGLVAGDWVCLREENEKHSHVGILHAINREGSVSVGFLGLQALWDGNSSEVEKVEPFCVDQFVRLKDTVSCPRFEWRRKRGGAWAAGRISWILPNGGLVVKFPGMLPFGNEANTYLADPSEVEVVEFRTCPGIIEKYEHLEDHHWAIRPVLVAFGLFTAFKFGILVGKKVRRNNKVNAVEIESHHQNANSATTISTTTMRSSNAAKQGNGTWVPSVFASIFFKEVGNSSNGR 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02615 642 Gene3D Phosphorylase Kinase; domain 1 23 129 - -
Vimu1g02615 642 PANTHER OS06G0639500 PROTEIN 1 636 - -
Vimu1g02615 642 Gene3D Transferase(Phosphotransferase) domain 1 132 334 - -
Vimu1g02615 642 SUPERFAMILY Protein kinase-like (PK-like) 42 310 IPR011009 -
Vimu1g02615 642 Pfam Protein tyrosine and serine/threonine kinase 45 307 IPR001245 GO:0004672|GO:0006468
Vimu1g02615 642 ProSiteProfiles Protein kinase domain profile. 45 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02615 642 ProSitePatterns Protein kinases ATP-binding region signature. 51 80 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02615 Vimu-Chr1 37773406 37777176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02615 21 316 MAP Kinase Kinase Kinase AT2G17700 24.252 2.05e-19 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-1 Vimu1g02615 PK_Tyr_Ser-Thr 6.2e-29 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02615 - - gsj:114393396 1027.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02615 1 37773406 37777176 Vimu1g02615 1 37773406 37777176 ECH
Vimu10g02972 10 40665958 40669880 Vimu1g02615 1 37773406 37777176 ECH
Vimu1g02615 1 37773406 37777176 Vimu10g02972 10 40665958 40669880 PCT