Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02603 ATGGTCGTCCAAGCAAAGAAGAAGTTCAGAGGAGTGAGGCAACGCCAATGGGGCTCATGGGTCTCAGAAATTCGTCACCCTTTGCTGAAGAGAAGGGTGTGGCTAGGGACATTTGAGACAGCAGAGGCTGCAGCAAGGGCATATGATCAAGCAGCCATTTTGATGAATGGTCGAAATGCCAAGACCAATTTCCCTACACAAGGTGGCAGCAGTTCCACCGTCTGTGAAGACCCTTTTTCATCTCCGAATGTTCTTGGTGAGGTTCTGAGTAGAAAGCTGAAGAGGTGCTTCAGAGACCCTTCTCCATCCCTCACATGTCTGAGACTGGATGCTGACAATTCCCACATTGGAGTGTGGCAAAAGGGTGCAGGACCACACTCAGACTCCAATTGGATTGTGAGGGTGGAGCTTGGAAACAAACGTGCAGAGACTGAGTCAAGTGTGTCAGAAGGATCTACACAAAATGATGGTGAAGAAGACGAAGAAGATAGAATTGCGATGCAGATGATTGATGAGCTTCTTAATTGGAACTATCCATGTGCTGCTTCAAGTAATTAA 558 0.4731 MVVQAKKKFRGVRQRQWGSWVSEIRHPLLKRRVWLGTFETAEAAARAYDQAAILMNGRNAKTNFPTQGGSSSTVCEDPFSSPNVLGEVLSRKLKRCFRDPSPSLTCLRLDADNSHIGVWQKGAGPHSDSNWIVRVELGNKRAETESSVSEGSTQNDGEEDEEDRIAMQMIDELLNWNYPCAASSN 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02603 185 CDD AP2 7 67 IPR001471 GO:0003700|GO:0006355
Vimu1g02603 185 SMART rav1_2 8 71 IPR001471 GO:0003700|GO:0006355
Vimu1g02603 185 MobiDBLite consensus disorder prediction 142 162 - -
Vimu1g02603 185 FunFam Ethylene-responsive transcription factor 2 7 66 - -
Vimu1g02603 185 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 5 142 - -
Vimu1g02603 185 Pfam AP2 domain 8 57 IPR001471 GO:0003700|GO:0006355
Vimu1g02603 185 SUPERFAMILY DNA-binding domain 8 66 IPR016177 GO:0003677
Vimu1g02603 185 Gene3D AP2/ERF domain 7 67 IPR036955 GO:0003700|GO:0006355
Vimu1g02603 185 PRINTS Ethylene responsive element binding protein signature 31 47 IPR001471 GO:0003700|GO:0006355
Vimu1g02603 185 PRINTS Ethylene responsive element binding protein signature 9 20 IPR001471 GO:0003700|GO:0006355
Vimu1g02603 185 ProSiteProfiles AP2/ERF domain profile. 8 65 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02603 Vimu-Chr1 37575084 37575825 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02603 7 183 AP2-EREBP Transcription Factor Family AT5G25390 59.669 1.43e-70 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vimu1g02603 AP2 1.7e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02603 - - var:108320982 330.872