Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02600 TTGTTTTACTTACCACTGGTTCGTTGGACCTCTATTTTCTTTGGTTCGCCACCAGTGCAACATGAGTGCATACCTCAAGCTATACTTGGAATGGATGTGATTTGTCAAGCTAAATCTGGAATGGGAAAAACTGCTGTATTTGTTCTATCTACCCTGCAGCAGATTGACCCTGTTGCCGGGCAAGTTTCTGCACTTGTCTTGTGTCATACAAGGGAATTAGCATACCAGATATGCAACGAATTTGAAAGGTTTAGCACCTACCTACCCGATCTAAAGGTTGCTGTCTTTTATGGTGGCGTCAACATAAAAGTTCACAAGGATCTATTGAAGAACGAATGCCCTAGTATTGTTGTTGGTACACCTGGAAGAATACTTGGATTGGCTAGGGATAAGGACCTTTCTTTGAAGAATGTTAGACATTTCATTTTAGATGAATGTGATAAGATGCTAGAATCTCTGGACATGAGGAAAGATGTGCAAGCTATTTTCAAGATGACACCCCATGATAAGCAAGTTATGATGTTTTCTGCAACGCTCAGCAAGGAAATACGGCCTGTCTGCAAAAAATTTATGCAAGATGTAATGCCCCATAATCAATACTACTTATTACTAGTCTTTTTTCTTAACCAGTTTTTATGGAAACAACTTCTGGGTATGGCGTGTGGTTGGGTAGCTATAGCTGGGGATGGTAGATCTGAAGTCTGTCTGTCTGATGCGGTTTTTTACAACATAGGATATTCTCTATTTGTCATAGCTAATGGCGGGAGGGTGCCAATGGAAATTTATGTTGATGACGAAGCAAAGTTGACCCTTCATGGACTTGTGCAGCACTACATCAAATTGAAAGAGGAGGAGAAGAACAGGAAGTTGAACGACCTTCTTGATGCATTGGACTTCAATCAAATTGTTATCTTTGTGAAAAGTGTTAGTAGAGCAGCGGAGCTGGACAAACTGCTTAGAGAATGCAACTTCCCATCTATTTGCATTCATTCTGGAATGTCTCAGGAAGAAAGGTTAAAGCGATATAAAGGTTTTAAGGAGGGTCATACAAGAATTCTAGTTGCAACAGATTTGGTTGGTAGGGGTATCGATATCGAACGTGTGAATATAGTTATAAACTATGACATGCCGGATTCTGCTGATACGTACTTGCACAGGGTTGGCCGCGCTGGACGATTTGGAACCAAGGGCCTTGCAATTACATTTGTTTCATGTTCCACTGATGTTGATGTTCTCAACAATGTTCAATCCAGGTTTGAAGTTGATATAAAGCAGCTTCCTGAGCAGATTGATACAGCTAGCTACAGTAGGATTTCATGTTTTCTTTGA 1329 0.4056 MFYLPLVRWTSIFFGSPPVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICNEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPSIVVGTPGRILGLARDKDLSLKNVRHFILDECDKMLESLDMRKDVQAIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDVMPHNQYYLLLVFFLNQFLWKQLLGMACGWVAIAGDGRSEVCLSDAVFYNIGYSLFVIANGGRVPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQIVIFVKSVSRAAELDKLLRECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTASYSRISCFL 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02600 442 CDD SF2_C_DEAD 274 403 - -
Vimu1g02600 442 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 408 IPR027417 -
Vimu1g02600 442 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 18 412 - -
Vimu1g02600 442 Pfam Helicase conserved C-terminal domain 287 394 IPR001650 -
Vimu1g02600 442 SMART ultradead3 13 211 IPR014001 -
Vimu1g02600 442 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 273 434 IPR001650 -
Vimu1g02600 442 Gene3D - 270 437 IPR027417 -
Vimu1g02600 442 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 24 197 IPR014001 -
Vimu1g02600 442 Gene3D - 13 196 IPR027417 -
Vimu1g02600 442 FunFam DEAD-box ATP-dependent RNA helicase 270 438 - -
Vimu1g02600 442 Pfam DEAD/DEAH box helicase 18 183 IPR011545 GO:0003676|GO:0005524
Vimu1g02600 442 FunFam DEAD-box ATP-dependent RNA helicase 56-like 7 199 - -
Vimu1g02600 442 CDD DEADc_DDX39 19 195 - -
Vimu1g02600 442 SMART helicmild6 313 394 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02600 Vimu-Chr1 37533905 37536711 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02600 19 435 Eukaryotic Initiation Factors Gene Family AT5G11200 79.376 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02600 K12812 - han:110891513 635.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02600 1 37533905 37536711 Vimu1g02600 1 37533905 37536711 ECH
Vimu10g02952 10 40499533 40508214 Vimu1g02600 1 37533905 37536711 ECH
Vimu1g02600 1 37533905 37536711 Vimu10g02952 10 40499533 40508214 PCT