Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02592 ATGGATTCTGAAATACTCCTTATCTTTTCCTTTCTCCTCTGCATGATTGCGGCACTCAAACTAGGGAGAAACCTCAAGAAAAAAAGCAAGTCATCATCACTAAACATACCCCCTGGACCATGGAAGCTTCCTATTATAGGAAACTTGCACCATCTTGTTTCATCCACACCGCACCGAAAACTAAGAGACTTAGCCAAAATATACGGACCCATGATGCATCTCCAGCTAGGAGAGCTCTTCATAATCGTTGTTTCCTCAGCAGAGTATGCCAAAGAGATCATGAAAACACATGATGCAACCTTTGCATCAAGACCTAAACTTCTGGCAGCAGATATAGGTACTTATGGATACACAAACATTGCTTTTGCACCTTACGGAAGTTACTTGAAAAAGGTACGAAGAATCTGCAACATGGAGCTTCTGTCTCCAAAACGTGTCAGTTCATTCCAACCGATCAGAGAAGAAGAACTGAGCAATCTGGTTCAAATTATTGGTTCACATGTTGGAGGGTCCCCCATCAACCTCACTGAGGCAGTGTCCTTATCAATGTATAACATCATTTCAAGAGCTGCTCTGGGGCAGAAGCGCACCAAAGACCACGATGAGTTCATGTCTATAGTCCAACGAGGAGTGCTTGGTGCAGGAGGTTTTGACATAGGAGAGTTGTTTCCTTCTGCTACATGGCTTCAAAATCTCACTGGTTTGAGGCCTATGCTTGAGAAGGTGCATCAACAAATGGATCGGATACTGGAAGCCATCATCAATGAACACAGAGAAGCAAGATCCAAAGCCCAACATGGCCATGAATCAGTCGAAGATTTGGTAGATGTTCTCCTAAACTTCCATGATGCTAATGACAGTAACCATGAAGTTTGCTTAACCATTGACAATATCAAAGCAGTAATCACGGACATTTTTGTAGCTGGGGTTGAGCCTGTGACAACTACCATAAACTGGGCAATGGCAGAGATGATGAGGAATCCAAGAGTGATGAAGAAAGCACAAGATGAGGTGAGAAAGGTGTTTAAAGAAAAGGGAAGGGTTGATGAGATTTGCATGAATGAACTACAATACTTGAAATCAGTTGTGAAAGAAACCCTAAGGTTACACCCACCAGCAGTTCTTCTGGTTCCAAGAGAATGTGCAGAGACATGTGAAATTGATGGGTATGAGATACCAGAGAAAACTAAGGTATTGATAAATGCTTGGGCAATTGGAAGAGACCCAAAGTACTGGAGTGAAGCAGAGAGGTTTTATCCAGAGAGATTCATTGACAGCTCCATTGATCTTAAAGGGAGTCATTTTGAGTTCATTCCCTTTGGTGCTGGAAGAAGAATCTGTCCTGGCATTTCCTTTGGCTTGCTAAATGTTGAACTCACTCTTGCTGTTTTGTTGTTTCACTTTGATTGGAACCTTCCTAATGGAATCAAAAGTGAAGACTTTGACATGACTGAGAATTTTGGAGTCACTGTTGGATTAAAGAATGACATTTTCTTGACACCTCTCCCTGCTGGAACCCAACAATTGGCGCCCACCGTGGGGCAAGGATTCAAGAATTCCCAAGGAGCGATGGCAACCAAGTTCGACGTAGAAAAGTTCAACGGCGCTAATGACTTCGGGCTGTGGAAGATCAAGATGGAGGCAATCTTGATACAGCAGGGATGTGATGAAGCGTTGAAGGGTGAGTCGAGGATGAGTGGTACCATGACTCAAGAAGAGAAGAAGAAGATGGGAGATAAGGCAAGGAGTGCAATCATCTTGTGCCTTGGTGATAAGGTACTGAGGGAGGTTGCGAAGGAGAAGACTGCCGCTGAAATCTGGGCAAAACTAGAGTCTCTGTACATGACGAGATCGTTGGCTCATAGGTTGTGCCTGAAGCAGCAACTCTTTTCGTTCAAGATGTCAGAATCAAGAACGATAGAGGAGCAGATTGCAGAATTCAGCAAGATAGTTGATGATCTGGAGAATATTGAAGTGAAGTTGGAGGATGAAGATAAAGCTGTCATCCTGTTGAATGCGCTTCCAAAAACCTTCGAGCATTTCAGGGATGCGTTACTCTACGGGAAAGATCAAGTGATCACGTTAGAGGAGGTTCTGACGTCAATTCGAACCAAGGAGTTCCAAAAACTCCAAGATTCGAAGACAACCGAGGAAGGAGCGTCCGGATTGATCTCGGTGAAAGGGAAAGGGAAGAAGCAGTCTGGAAAAGAGAAGAAGCTGAACCCGGACGGTACGAAGCAGGTGCGTTGCTTCAAGTGCCAGAAGATGGGTCATATCAAGAAGTTCTGCCCGGAGAAAGGAAAGGCCGGTCGGCCACAAGAAACCGCTGATGTGGCAGAGGCGTCTGAGGGATATGAGTCGGCTGGAGTGCTGGTGGCTTCGTCTGAAGATCCTCAAAGGAGCTGGGTCATGGATTCCGGCTGCTCCTATCACATGTGCCCGGTAAAGGAGTTTTTTGAGAATCTTGATCAGAAAGAGCATGGTAATGTACTGCTCGGAAATAACAAAGCTTGCCGAGTGCAAGGTGTGGGGTCGGTGAGGCTGAAGATGTTTGACAATCGTGAGATGGTGTTGCAGGCCGTTCGGTATGTGCCCGAACTAAAGAGAAATTTGATTTCTATTAGTGCATTTGATCTTGGAGGTTACACCACTAAAGTTGAAGATGGAGTAATGAGGGTTTGTTCTGGAGATTCTGTGGTTGCCAAAGGCAGAAGGAGGAACGGCTTGTACATTCTGGAGGGATCTACTGTCATTGGTCATATCTCAGTAGCAAGTGGGACCGAGAATACCGCCCGGTTATGGCACTTGAGGATAGGACACATCAGTGAAAAGGGTCTTGAAGAATTGGAAAAGCAAGACTTACTTCTGGGAGACAAACTGCAGAAGCTGGATTTCTGTGACCATTGTGTCTTAGGGAAATCACACAGGATACCGTTCGGAAAAGGGAAACACTCAACCGAACGCCCCTTTGAATATGTCCATGCTGACTTATGGGGACCGGCAAGAACCTTAACTCATGGTGGAGGAGCGTATTTCTTAAGTATAATTGATGATTTCTCAAGGAGAGTGTGGATTTACGTTCTAAAAAATAAGTCTGAAACGTTTCAGAAGTTCAAAGAGTGGCACACACAGATTGAGAACCAATTGGGGTGTAGGCTGAAATGCCTAAGAACCGATAATGGGCTGGAGTTCGTTTCAGAGGAGTTTAATGGTTTTTGCAAAGAGAAAGGGATCAGGAGGCACAGAACGGTCGTTGGAACTCCTCAACAGAATGGATTGGCCGAACGGATGAATAGAACCATTCTGGAGAGGGTCCGGTGCATGTTGCTGGGATCAGGATTGTCGAAGGCTTTCTGGGGAGAGGCTGCCAATACGGCCGTCTATCTGATTAACAGGAGTCCATCTTCAGCTCTCAATTTTAAAACGCCAATGGAAGTGTGGAGTGGACGACCGGCTGATTATTCACACTTGAGAGTGTTTGGTTCTTTGGCGTTTGCTCATGTCAGGGGTGATAAGCTGGATTCCCGGGCGGCGAGATGTATCTTTCTTGGATACGCCGACGGAGTTAAGGGATACAGGTTATGGAGGTTAGATTCACCTTCAAAACTAATCATTAGTAGGGATGTCATTTTTGATGAAACAAGGATGGCGATGCACCCGGAAAACTCTGGAAGTGAGAAGAAGATTCTCGTGGAGGTGGAGCATACTACTAATGGAGCTGGCACGTCCGGTGGGACTGAGGAAAACCAAACGGGTGAAGGGCAAGTTGAAAACGGTCGGACGATAGAGGAGAACCGATCGGATGAATTTCGAACAGACCTTGGTGATGATACAGATGGTATGTCTTGCGAGGGAAGTCATGGAAAAGCTGCTGGTGTTGATTTGAGAAACTATCAGCTTGTTCGTGACAGAGAAAGAAGGATCTCCAAGCCAACCAAACGGCTTGGAGAGGCGGATCTAATCTGCTACGCCCTGAATGCTGCTGAAGATATTAACCGATCGGATGAACCGAGAAGTTATAAGGAGGCTCTTGACAGCAGCGACCGGCATCTTTGGCAGGGTGCTATGGAAGAAGAGTTGGAGGCTTTGAAAAAGAATAGCACCTGGAGATTGGTGGATCTGCCGAAGGGTAAGAAGGTCATAGGTTCGAAATGGATTTTCAAGAAAAAGGAAGCTACACCGGGCGGTGAGAAAGCGAGGTACAAAGCTAGGCTTGTTGCCAAAGGCTTTACTCAGATTGAAGGCGTAGACTATCATGAGATCTTTGCTCCAGTGGTTAAGCATTGTTCGGTCAGAGTTCTGATGGCAATAGTTGCGCATTGCAATTTGCATCTTGAACAGTTGGACGTTCGGACAGCTTTTCTGCACGGCGATTTGGAGGAAACCATCTATATGAAGCAACCGGACGGTTTCGCTGTGGATGATAGGGTGTGTCTGTTGCAGAAGTCACTTTATGGCTTGAAGCAAAGCCCAAGGCAGTGGTACAGGAAATTTGATGACTTTCTGATAAAGCTGAACTTCAAGCGGTGCAATTATGATGACTGTGTTTACACTCTGAATCATGGCGGCGAAATGTTATATCTCCTGCTTTATGTGGATGATATCCTAATTGCTAGCAGTGACAGGGGCATGATCGGTGAGACGAAAGCAAGGTTGGCGGATGCTTTCGAAATGAAAGAGCTAGGGGAAGCAAGGCGGATTTTGGGCATAGACATTAAAAGGGATAGACCGGGCGGTAACCTTTTTCTGTCTCAGGAATGCTATTTGCATAAGGTAATTTCAAGGTATCGGATGGCTGAATCTAAAATGGCCAGCACGCCGGTCGGTCAACACTTGAAACTTACCAAGGAGCAATGCCCAAAGACCGAGGAAGAAAGAAAGAAGATGGAATCTGTTCCATTTTCAAATGGGATTGGGAGCATTATGTACGGCATGGTCTGCACAAGACCGGACGTGGCGCACGGTGTTAGTGTTCTCAGTCAGTTCATGGTTAATCCTGGACCAACACACTGGGAAGCGTTGAAGTGGATGCTCAGATATATACGGGGGTCTCTCGGTACTGGATTGTCTTTCCAGAATAACTTTCAAGGTGGAGGTTATATTGAAGGTTTTGTTGATTCCGACTTTGCCGGATGCATGGACACTAGGAAATCCCGGTCGGGATATGTGTTTACACTGTTTGGGACTGCTGTTAGCTGGAGGTCTACACTACAGTCGGTTGTGGCTTTGTCAACTACGGAAGCTGAGTACTATGCTCTTGCTGAAGGAGTTAAGGAGGCACTGTGGTTGAAAGGTTTGGTTCGGGAACTTGGTTTTGATCAGAAGTCTGTATGTGTTCATTGCGACAGCCAGAGTGCTATTCATCTGGCCAATCATCAGATTTATCATTCCAGAACCAAGCATATTGACGTCAAGCTGCACTTTGTCAGAAGCATTGTTGAATCCGGTGACGTTCAAATCTGCAAAATTGCATCCGAAGAGAATCCTGCAGATATGTTAACAAAGCCGCTCGCTAAGGAGAGGTTTCTCTTACTGTTGTCCAGGATTGGGTGTCTACCGGTCGGTCACTAA 5571 0.4572 MDSEILLIFSFLLCMIAALKLGRNLKKKSKSSSLNIPPGPWKLPIIGNLHHLVSSTPHRKLRDLAKIYGPMMHLQLGELFIIVVSSAEYAKEIMKTHDATFASRPKLLAADIGTYGYTNIAFAPYGSYLKKVRRICNMELLSPKRVSSFQPIREEELSNLVQIIGSHVGGSPINLTEAVSLSMYNIISRAALGQKRTKDHDEFMSIVQRGVLGAGGFDIGELFPSATWLQNLTGLRPMLEKVHQQMDRILEAIINEHREARSKAQHGHESVEDLVDVLLNFHDANDSNHEVCLTIDNIKAVITDIFVAGVEPVTTTINWAMAEMMRNPRVMKKAQDEVRKVFKEKGRVDEICMNELQYLKSVVKETLRLHPPAVLLVPRECAETCEIDGYEIPEKTKVLINAWAIGRDPKYWSEAERFYPERFIDSSIDLKGSHFEFIPFGAGRRICPGISFGLLNVELTLAVLLFHFDWNLPNGIKSEDFDMTENFGVTVGLKNDIFLTPLPAGTQQLAPTVGQGFKNSQGAMATKFDVEKFNGANDFGLWKIKMEAILIQQGCDEALKGESRMSGTMTQEEKKKMGDKARSAIILCLGDKVLREVAKEKTAAEIWAKLESLYMTRSLAHRLCLKQQLFSFKMSESRTIEEQIAEFSKIVDDLENIEVKLEDEDKAVILLNALPKTFEHFRDALLYGKDQVITLEEVLTSIRTKEFQKLQDSKTTEEGASGLISVKGKGKKQSGKEKKLNPDGTKQVRCFKCQKMGHIKKFCPEKGKAGRPQETADVAEASEGYESAGVLVASSEDPQRSWVMDSGCSYHMCPVKEFFENLDQKEHGNVLLGNNKACRVQGVGSVRLKMFDNREMVLQAVRYVPELKRNLISISAFDLGGYTTKVEDGVMRVCSGDSVVAKGRRRNGLYILEGSTVIGHISVASGTENTARLWHLRIGHISEKGLEELEKQDLLLGDKLQKLDFCDHCVLGKSHRIPFGKGKHSTERPFEYVHADLWGPARTLTHGGGAYFLSIIDDFSRRVWIYVLKNKSETFQKFKEWHTQIENQLGCRLKCLRTDNGLEFVSEEFNGFCKEKGIRRHRTVVGTPQQNGLAERMNRTILERVRCMLLGSGLSKAFWGEAANTAVYLINRSPSSALNFKTPMEVWSGRPADYSHLRVFGSLAFAHVRGDKLDSRAARCIFLGYADGVKGYRLWRLDSPSKLIISRDVIFDETRMAMHPENSGSEKKILVEVEHTTNGAGTSGGTEENQTGEGQVENGRTIEENRSDEFRTDLGDDTDGMSCEGSHGKAAGVDLRNYQLVRDRERRISKPTKRLGEADLICYALNAAEDINRSDEPRSYKEALDSSDRHLWQGAMEEELEALKKNSTWRLVDLPKGKKVIGSKWIFKKKEATPGGEKARYKARLVAKGFTQIEGVDYHEIFAPVVKHCSVRVLMAIVAHCNLHLEQLDVRTAFLHGDLEETIYMKQPDGFAVDDRVCLLQKSLYGLKQSPRQWYRKFDDFLIKLNFKRCNYDDCVYTLNHGGEMLYLLLYVDDILIASSDRGMIGETKARLADAFEMKELGEARRILGIDIKRDRPGGNLFLSQECYLHKVISRYRMAESKMASTPVGQHLKLTKEQCPKTEEERKKMESVPFSNGIGSIMYGMVCTRPDVAHGVSVLSQFMVNPGPTHWEALKWMLRYIRGSLGTGLSFQNNFQGGGYIEGFVDSDFAGCMDTRKSRSGYVFTLFGTAVSWRSTLQSVVALSTTEAEYYALAEGVKEALWLKGLVRELGFDQKSVCVHCDSQSAIHLANHQIYHSRTKHIDVKLHFVRSIVESGDVQICKIASEENPADMLTKPLAKERFLLLLSRIGCLPVGH 1856
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02592 1856 SUPERFAMILY Cytochrome P450 37 501 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02592 1856 Coils Coil 644 664 - -
Vimu1g02592 1856 Gene3D Cytochrome P450 22 498 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02592 1856 Pfam GAG-pre-integrase domain 908 974 IPR025724 -
Vimu1g02592 1856 SUPERFAMILY DNA/RNA polymerases 1365 1808 IPR043502 -
Vimu1g02592 1856 MobiDBLite consensus disorder prediction 1259 1275 - -
Vimu1g02592 1856 MobiDBLite consensus disorder prediction 1237 1275 - -
Vimu1g02592 1856 SUPERFAMILY Retrovirus zinc finger-like domains 740 770 IPR036875 GO:0003676|GO:0008270
Vimu1g02592 1856 Gene3D - 982 1160 IPR036397 GO:0003676
Vimu1g02592 1856 FunFam Cytochrome P450 71D8 29 501 - -
Vimu1g02592 1856 Pfam Integrase core domain 987 1088 IPR001584 GO:0015074
Vimu1g02592 1856 CDD CYP71-like 68 496 - -
Vimu1g02592 1856 ProSiteProfiles Zinc finger CCHC-type profile. 749 765 IPR001878 GO:0003676|GO:0008270
Vimu1g02592 1856 Pfam gag-polypeptide of LTR copia-type 576 705 - -
Vimu1g02592 1856 SUPERFAMILY Ribonuclease H-like 987 1160 IPR012337 -
Vimu1g02592 1856 PRINTS P450 superfamily signature 361 372 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02592 1856 PRINTS P450 superfamily signature 308 325 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02592 1856 PRINTS P450 superfamily signature 438 447 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02592 1856 PRINTS E-class P450 group I signature 437 447 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02592 1856 PRINTS E-class P450 group I signature 447 470 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02592 1856 PRINTS E-class P450 group I signature 360 378 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02592 1856 PRINTS E-class P450 group I signature 297 314 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02592 1856 PRINTS E-class P450 group I signature 65 84 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02592 1856 PRINTS E-class P450 group I signature 89 110 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02592 1856 PRINTS E-class P450 group I signature 317 343 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02592 1856 PRINTS E-class P450 group I signature 401 425 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02592 1856 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 440 449 IPR017972 GO:0005506|GO:0016705
Vimu1g02592 1856 ProSiteProfiles Integrase catalytic domain profile. 985 1151 IPR001584 GO:0015074
Vimu1g02592 1856 PANTHER CYTOCHROME P450 71B11-RELATED 15 502 - -
Vimu1g02592 1856 Gene3D - 725 778 - -
Vimu1g02592 1856 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 1366 1608 IPR013103 -
Vimu1g02592 1856 Pfam Cytochrome P450 37 487 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vimu1g02592 1856 SMART c2hcfinal6 749 765 IPR001878 GO:0003676|GO:0008270
Vimu1g02592 1856 CDD RNase_HI_RT_Ty1 1702 1840 - -
Vimu1g02592 1856 MobiDBLite consensus disorder prediction 721 743 - -
Vimu1g02592 1856 MobiDBLite consensus disorder prediction 1237 1258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02592 Vimu-Chr1 37444920 37461884 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02592 37 501 Cytochrome P450 AT3G26330 42.553 1.67e-119 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02592 - - bna:106351154 1070.84