Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02589 ATGGAGGCCTCTGGTCTGCCGACGGCGGAATCCACCGCCTCAAGGATCAGTCGGTTGCTGCGCCAATCCCACTTTATTCCCGACGTGAGTCCCCTCCAACGGTGGTTTGAGACGCTACTTGAACGAGCTAGAGAGAGGTGGGTTTATGCAATTTACTGGGAGTACTCCTCTGCCAGTTCCCTTCTCTGTTGGCGTGACGGCTGTTTCCATGGCGAGGAGCACAACGGAAAAGCCCGCAAAGCGACGTCGTCCGAAGAACAGGCCCAGCGCAATAGCGTTTTCAGATTAATCAACTCCTTAATTTTAGGCACCTCGGCTACCCCTGATGACCGCGTCCAAGACATCACTGACACAGAGTGGTTCTTTTTTCTCTCCATGGCTCACAACTCCGTCGACAGCAGCGGCCTGCTGGGCCAAGCTTTCTTTACTTCGAACCCGGTTTGGGCCACCGGGCCAGACCTGTTATCTGAACCGGCCTGCCCACGGGCCCGGCGGTTGCATGAGTTTGGGCTTCAGACTATGGTTTGTATACCATGGCTAAACGGCGTCGTTGAACTGGGCTCCACTGACGTGGTTCTACCCAAGTCCAATCTTGATTTCATGATCAAAGTGCGAGATTCGATCATCTGCAAGGCCCCCTTCCTGGACTTGTTCTCTACTGCAATCTTACGACCACCACGGTTCTGGCTATCAGAAAGTTCCCATGGAGACTCTCATACAACACGTTCACATTCTTCTGGCTCATACTGGACCAAAGTGCGAAATTTGATCATGCGACCAAGGTAA 786 0.5318 MEASGLPTAESTASRISRLLRQSHFIPDVSPLQRWFETLLERARERWVYAIYWEYSSASSLLCWRDGCFHGEEHNGKARKATSSEEQAQRNSVFRLINSLILGTSATPDDRVQDITDTEWFFFLSMAHNSVDSSGLLGQAFFTSNPVWATGPDLLSEPACPRARRLHEFGLQTMVCIPWLNGVVELGSTDVVLPKSNLDFMIKVRDSIICKAPFLDLFSTAILRPPRFWLSESSHGDSHTTRSHSSGSYWTKVRNLIMRPR 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02589 261 PANTHER MYC 29 203 IPR045084 GO:0003700|GO:0006355
Vimu1g02589 261 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 32 198 IPR025610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02589 Vimu-Chr1 37414637 37417562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02589 32 205 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 43.478 1.06e-40 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02589 K13422 - vum:124822692 414.075