Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02588 ATGTTTAGAGCATTGGGTCACTTACTTTGTTTCAGACTGGAATCTTCTTATTATAGATATGTAAGCTCTTTATCACCAATAAACATCAAGGCTTCACATAGCACACGATGTTTTATAGGGCTCAGTTCTCCACCCCTTGTATTCAAGTCTCCAAGTATTAGTCACCGTCAAAGACAGTTCATGCAAAGGACACAAGAATCTCAAACTGAAAATTTTGAAGCTCCTGGATATTACTGGAAATCAAATTTTCATCAGCCACTGCTAGAGACGTTTGTAATTGACACTCAAAACGTTTTTGACGCCAAGATTGACGTGAATACGCAACACTATGGAGAGAATTTGTCTAGTTATAAATATTTGGCTGATCCAGGGGATATTGATCAAATGTATTTTGCTGACGAAGATGTAGAACAACAATCTACAGTTGCAGCTGAAACATCACTTAGTTACCCAACTCAGTCAAACATATTAAACATTGGCACGAAAGATGGTCTTGGTCATAAAGAATCTTTGCCTCTATCAGAGGATTCTAGCAAGGTTCATCAACAGATACCAGTATACGGTGATGTTGAGAAACGATATAGTCATGATCCACTACTTCCTCAGGCCACTATGAAGTACCATGATGTTGGAAGACGCCGCCTACAATTTGAGGAAGGTGCTTCCAGTGCTATTGGAAGTAACAATTCCCATGAAAACCTGAATGCAACTTCAAACAACGTGAAAAGGATGGAGCTGGTTGAATCTGTTAGTTCCACCGTGAATCCTCAGCAAGGTTGTGGAAAATTACCTTTACCAGATAATTCACCAGGGATGAACATGAAGAGATCCATACTTTCGTCTAATGTCAATGGGGAATCATCTGTTGAAGGTAGAATTGGTAGTCATGAAGGTGATGCTAAGGGTGCTGGAAACTCCGAGGAATTCAACAAATCTCCTAGCCCCGGCAAGAAAAAGAAGAAAACATCGGTTCCTGCTAATCAAGGTGGCTGTAGACGGTGCAACTGTAAGAAGAGTAAATGTATAAAACTTTACTGTGAGTGTTTTAATGCCGGAGTCTACTGCATTGGCACTTGTGGTTGCGAAGACTGCTTAAACAGACCACAATATGAAGGGATGATCATGGAGTGTAGACGACAAATTGAATCCCGCAATCAGGAAAATTCTGCAAGACACAAAAGAGGTTGCAAATGCAAAAGATCTACATGTCTGAAAAAGCTAAAGTTGGATGCTCTAGTGGATGTGGATGTCAGGGTTGTAAGAATTCCTATGGCAAGAAAGAAGGCAAGAGTTTTATATTATGAATAG 1308 0.3998 MFRALGHLLCFRLESSYYRYVSSLSPINIKASHSTRCFIGLSSPPLVFKSPSISHRQRQFMQRTQESQTENFEAPGYYWKSNFHQPLLETFVIDTQNVFDAKIDVNTQHYGENLSSYKYLADPGDIDQMYFADEDVEQQSTVAAETSLSYPTQSNILNIGTKDGLGHKESLPLSEDSSKVHQQIPVYGDVEKRYSHDPLLPQATMKYHDVGRRRLQFEEGASSAIGSNNSHENLNATSNNVKRMELVESVSSTVNPQQGCGKLPLPDNSPGMNMKRSILSSNVNGESSVEGRIGSHEGDAKGAGNSEEFNKSPSPGKKKKKTSVPANQGGCRRCNCKKSKCIKLYCECFNAGVYCIGTCGCEDCLNRPQYEGMIMECRRQIESRNQENSARHKRGCKCKRSTCLKKLKLDALVDVDVRVVRIPMARKKARVLYYE 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02588 435 PANTHER PROTEIN TESMIN/TSO1-LIKE CXC 2 14 71 IPR044522 GO:0003700
Vimu1g02588 435 MobiDBLite consensus disorder prediction 273 289 - -
Vimu1g02588 435 Pfam Tesmin/TSO1-like CXC domain, cysteine-rich domain 332 367 IPR005172 -
Vimu1g02588 435 SMART CXC_2 329 370 IPR033467 -
Vimu1g02588 435 ProSiteProfiles CRC domain profile. 330 406 IPR005172 -
Vimu1g02588 435 MobiDBLite consensus disorder prediction 251 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02588 Vimu-Chr1 37408585 37410792 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02588 318 406 CPP Transcription Factor Family AT4G14770 50.877 3.41e-28 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CPP Vimu1g02588 TCR 5.1e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02588 - K21776 gmx:547664 345.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02588 1 37408585 37410792 Vimu1g02588 1 37408585 37410792 ECH
Vimu1g02588 1 37408585 37410792 Vimu10g01933 10 27837281 27839497 PCT