Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02582 ATGCTTGCTTTGCCCTCTACTCGATCTGCGTTTCTTCAATTTGGTTTCTTGCTTGGTTCTAGCGTGAACGTTGCGACTGGGATTTTGGCCGTTATGTCAAGATCTTTGGAGTCAGCTGCACCGTATGGTCACCCTAATCGCGACCACATCTGCTTAATTTACGGATTGAGTTTAAGTGGTGGGGTCATGACGAAGAAGAAGAATTCTCTGGTGTTTATGGATGTGTCCATAGATGGGGATCCTGTTGAAAGGATGGTTTTTGAGCTCTTCTATGATGTTGCTCCGAAGACTGCTGAAAATTTCCGTGCATTATGTACAGGAGAAATGGGAGTTGGTCCAAACACTGGAAAATCACTGCACTACAAGGGTTCTTTCTTCCATCGGATTTTGAAAGGCTCCATTGCCCGACCAATTACCGTTGTTTATTCTGTAGGATACAGGGCTGATGGTCACGACTTCCTTTCTTGTGATATAGTTTTAAGGGTGGTGATTTTGTCAATCGAAATGTTGTCCGAGTTGCAAGCCATGTTCCATTTTCATGTTTGCTGTGACAATGGGACCAGTGGAGAAAGCATATATGGTTCCAAGTTCCCAGATGAATCACCTAGGCTAAAGCATGATGCTCGAGGCCTTCTTTCAATGCCAGTTGCTGATCGTGACACTCTTGGTTCTCATTTTATAATTACTTTTAAAGCTGATCCCCATCTTGATAGGAAACATGTAGTCTTTGGCAAGCTTGTACTAGGTCATGATATATTGAAGAAAATTGAAGATGTGGGTGATAAAGAAGGACTTCCAAGTGTAACTGTTAAAATAATTAATTGTGGTGAACATAACGAGGATGAAAAGAAGATAAATAAATCAAAAAAGGGAAGAGATGGATCTTCTGAAACAAATAGTCATTTACTGCATAAGGGAAAGCACCGAAAATCTTCAGGTGACAAAAGGAAAAGGAGAAAGTACTACTCATCAGAATCTGATAGTTCCTCAGATTCAGAAACAACATCTTCTGAAAGTGACAGTGATTCTGATTCTGATATGTCTTCATCATCTTACACAAGTTCCTCCAGCGATGATAGGCGGAGAAAGAGAAAGAGGTCTAGGAAAGATAAACATAAACGTGGAAAAAAAAGAGATAAACACCGAGAAAAGAGACGGAGGAAACAAGATAAAAGATCAAAGCGTAGATCAAAGAGGGAATCGCCCAGTCATACTGATTCAGATAGTGAAAGTAAGAGCAACAAATGCTCTGATATTGAAAGTTATGGTGCCAAAGTGAATGATCAGAATGATGAAGACCATTCTCAGAGACATGCTGAAGGTCAGTCTTCCTCAGTTGTCGAGAAAGAATTACCTCCAATGCACCCTAAAAAGAGGGAGAAACTGGATATATTGAAAGAGGAAGAATTCCCAAAGGAAAATGGAGAGCGGCGTAGCAATGGCACTGGAGCCAACTATAGATCTGAAAGAAGTGAAGTGAGGCAGCCTGATGTGATGGATGATCGACCAGACAAATCTAGGAGTCAAAGCACGAGTGTGAGTCCTAGGAGGCGCAAGAGCAAAAGCCCAAGCATTAGTCCAAAAAGGAGGTTGGACAGAAGTCCAAGTGGCAGTAGAAGTCCTCATTCTCCATTACGGAGGAGTTTGAGCCAGAGTCCTGTTAGAAGCACAAGGAGGAGTCCAAACAGAAGAAGCGTCAGTAGAAGCCCAATGAGAGGTAGGAAAGGTAGAAGTATCAGTAGAAGCTCTGTAAGACATCATGGGCATCAAAGTGTCAGCACAAGCCCTGTAAGACCCCTTTCTCGGAGCTACCAGAGGACTTCACCAAAAACATCATCACGAAGATCAATCAGCAGAAGCCCTAAGACATCTCATGGTCGAAGAAGTGTCAGTGCAAGCCCAGGAAGATCCCCTTCTCGGAGCCAAAGAAGGAGTTCACCCATAGCACCATCACGTCGATCAATCAGCAGAAGCCCAGTAAGAAATCTCCGACCTAGAAGTGTCAGTAGAAGCCCTTTAAGATCTCAAGGTCGTAGAAGTGATAGTGGAAGCCCTTTAAGATCCCTCACACCGAGTCCTCCTATATCACCCAGAACAAAATCTAAAAGATCAATCAGCAGAAGCCCTGTGAGAACTCGCAACTATAAAAGTATCAACAAAGGCACCTTGAGATCTCGTGGTCGTAGAACAAGCAGTGGAAGCCCTGTAAGATCCCTTTCTCGAAGTGGCCGTAGGAGTTCACCAAGAGCACCTTCACAAAGATCAATCAGTAGAAGCCCTGTGAAAACTGGCAATCATAGAAGTGTAAGTAGAAGCCCCTTGCGATCTCATGGTCACAGGACTGTGAGTGCTAGCCCTGTTAGATCACCTTCATGGGAGCGTCGAAGGAGTTCACCTAGAGCACCATCACGAAGATTGGTCAGTAGAAGCCCGGTAAGAGTGTCAAGAAAGAGTTTAAGCAGGAGTCCAGTTCGATCATCTGCCAGAAGCTTGAGCAGAAGCTCTGGCAGAGTCCCTTTGAGAAGCAATAGTCGGAGTCCAGTACGAGGGCCAAGCAGAGTCCATCGCCGCAGTTATTCTAGGAGTCCTCGTGGTAGGAGTTTGTCTAGAAGTTTGTCACCTGATGTTTCCCCAAAACGTATCAGAAGGGGAAGAGGTTTTAGCGAACGATATTCTTATGCTAGAAGGTATAGGACTCCTTCTCGATCTCCTGTGAGATCATACCGCTATAATGGAAGAAGTGAACGTGACAGATATTCAGGTTACAGAAGGTACTCCCCTAGGCGTAACAGGAGCCCACTACCACGCAGAAGAACCCCACCAAGGTTCCGGAGTAGGAGGAGCAGGACACCATCTGTTTCTCGCAGTCCACGGTACAGGGGTCGACGATACAGTCGAAGCCGGAGTCCTGTCCGCAGTCGTTCACCTGTGGGCACGTATCGACGTCGTGTTGAGAGGAGCAGGTCTTTGTCCCGGAGTAGCAGGTCTTTATCCGGGAGCAAGAGTCCATCACTATCCAGGGCTTCGGTGGAGTCACAATCTCCACGAAAGAACAGCAGGTCAAGGTCCCAGTCCCAAAGCTCAGATGGAAAGAAAGGCCTTGTATCTTACGGAGACGGTTCTCCAGATTCAAGCTGA 3138 0.4538 MLALPSTRSAFLQFGFLLGSSVNVATGILAVMSRSLESAAPYGHPNRDHICLIYGLSLSGGVMTKKKNSLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALCTGEMGVGPNTGKSLHYKGSFFHRILKGSIARPITVVYSVGYRADGHDFLSCDIVLRVVILSIEMLSELQAMFHFHVCCDNGTSGESIYGSKFPDESPRLKHDARGLLSMPVADRDTLGSHFIITFKADPHLDRKHVVFGKLVLGHDILKKIEDVGDKEGLPSVTVKIINCGEHNEDEKKINKSKKGRDGSSETNSHLLHKGKHRKSSGDKRKRRKYYSSESDSSSDSETTSSESDSDSDSDMSSSSYTSSSSDDRRRKRKRSRKDKHKRGKKRDKHREKRRRKQDKRSKRRSKRESPSHTDSDSESKSNKCSDIESYGAKVNDQNDEDHSQRHAEGQSSSVVEKELPPMHPKKREKLDILKEEEFPKENGERRSNGTGANYRSERSEVRQPDVMDDRPDKSRSQSTSVSPRRRKSKSPSISPKRRLDRSPSGSRSPHSPLRRSLSQSPVRSTRRSPNRRSVSRSPMRGRKGRSISRSSVRHHGHQSVSTSPVRPLSRSYQRTSPKTSSRRSISRSPKTSHGRRSVSASPGRSPSRSQRRSSPIAPSRRSISRSPVRNLRPRSVSRSPLRSQGRRSDSGSPLRSLTPSPPISPRTKSKRSISRSPVRTRNYKSINKGTLRSRGRRTSSGSPVRSLSRSGRRSSPRAPSQRSISRSPVKTGNHRSVSRSPLRSHGHRTVSASPVRSPSWERRRSSPRAPSRRLVSRSPVRVSRKSLSRSPVRSSARSLSRSSGRVPLRSNSRSPVRGPSRVHRRSYSRSPRGRSLSRSLSPDVSPKRIRRGRGFSERYSYARRYRTPSRSPVRSYRYNGRSERDRYSGYRRYSPRRNRSPLPRRRTPPRFRSRRSRTPSVSRSPRYRGRRYSRSRSPVRSRSPVGTYRRRVERSRSLSRSSRSLSGSKSPSLSRASVESQSPRKNSRSRSQSQSSDGKKGLVSYGDGSPDSS 1045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02582 1045 Gene3D - 58 278 IPR029000 -
Vimu1g02582 1045 MobiDBLite consensus disorder prediction 303 317 - -
Vimu1g02582 1045 MobiDBLite consensus disorder prediction 876 896 - -
Vimu1g02582 1045 MobiDBLite consensus disorder prediction 399 415 - -
Vimu1g02582 1045 MobiDBLite consensus disorder prediction 361 398 - -
Vimu1g02582 1045 MobiDBLite consensus disorder prediction 568 584 - -
Vimu1g02582 1045 MobiDBLite consensus disorder prediction 585 703 - -
Vimu1g02582 1045 MobiDBLite consensus disorder prediction 813 849 - -
Vimu1g02582 1045 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 72 277 IPR002130 GO:0000413|GO:0003755
Vimu1g02582 1045 MobiDBLite consensus disorder prediction 327 355 - -
Vimu1g02582 1045 MobiDBLite consensus disorder prediction 537 567 - -
Vimu1g02582 1045 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 89 104 IPR002130 GO:0000413|GO:0003755
Vimu1g02582 1045 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 225 237 IPR002130 GO:0000413|GO:0003755
Vimu1g02582 1045 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 238 253 IPR002130 GO:0000413|GO:0003755
Vimu1g02582 1045 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 210 225 IPR002130 GO:0000413|GO:0003755
Vimu1g02582 1045 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 73 276 IPR002130 GO:0000413|GO:0003755
Vimu1g02582 1045 MobiDBLite consensus disorder prediction 451 476 - -
Vimu1g02582 1045 MobiDBLite consensus disorder prediction 929 953 - -
Vimu1g02582 1045 MobiDBLite consensus disorder prediction 425 439 - -
Vimu1g02582 1045 MobiDBLite consensus disorder prediction 710 792 - -
Vimu1g02582 1045 MobiDBLite consensus disorder prediction 280 1045 - -
Vimu1g02582 1045 MobiDBLite consensus disorder prediction 490 507 - -
Vimu1g02582 1045 MobiDBLite consensus disorder prediction 991 1032 - -
Vimu1g02582 1045 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 71 277 - -
Vimu1g02582 1045 MobiDBLite consensus disorder prediction 280 302 - -
Vimu1g02582 1045 MobiDBLite consensus disorder prediction 909 924 - -
Vimu1g02582 1045 SUPERFAMILY Cyclophilin-like 66 277 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02582 Vimu-Chr1 37340685 37347219 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02582 87 273 U-box Gene Family AT5G67530 29.630 2.73e-11 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02582 K09566 - twl:120005456 370.548