Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02580 ATGACTAAGAAAAAGAATTGTCTGGTATTTATGGATGTGTCCATAGATGGGGATCCGGTTGAAAGGATGGTTTTCGAGCTTTTCTATGATGTTGCTCCGAAGACTGCTGAAAATTTCCGTGCATTATGCACAGGAGAAAGAGGAGTCGGTCCAAACACTGGAAAGTCACTACACTACAAGGGTTCTTTCTTTCATCAAATCGTTAAAGGCTCCATTGCCCGGGAACTGGTGGAGAAAGCATTTATGGTTCCAAGTTCCCAGGTTTTAACAGATTGTACTTGTGATGTTTCAGATGAATCACCTAGGCTGAAGCACGATGCTCCAGGCCTTCTTTCCATGCCAGTTGCTGATCGTGACACTCTTGGTTCTCATTTTATCATCACTTTTAAAGCTGATCCACATCTTGATAGGAAACATGTAATCTTTGGCAAGCTTGTGCAAGGAGATAAAATATTGAAGAAAATTGAAGATGTGGGTGATGAAGAAGGACTTCCAAGCGTAACTGTTAAAATAATTAATTGTGGTGAACATAATGAGGATGGAAAGAGGATAAATAAGTCAAAAAAGGGAAGACTTGGAACTACTGAAACCCATAGTCCTGAACTGCATAGGGGAAAGCACAAAAAATCTTCAGATGACAAAAGGAAAAGAAGAAAGTACTACTCATCAGAATCGAGTAGTTCCTCAGATTCAGACATGAGATCTTCAGAAAGTGATACTGATTCTGACTCGGATACATCTTCATCTTACACAAGTTCCTCCAGCGATGACAGGCGGAGAAAGAGAAAGAGACCAACACCGAGACAAGAGACGAAGAAAACAAGACAAAAGGTCAAGACGCAAATCAAGAAGTGCAACACTATCAAAAAGTTGGCTGACACTGAGATTGTCTTTGGTGTTAGGGAATTGACCTGTCATACTGATTCAGATAGTGATAATAAGACTGGCAACAGCTCTGGTGGTGAAAGTCATGGTGCTCAAGCAAAAGATCAGAAGCATAAAGATCATTCTCAGAAGCATGCTGAAGGTCAGGCTTCCTTGGTTGTGGAGAAAGAATTACCTGCTGTGCTCCTTACAAAAGGGGAGAAACTGAATATGCTGGAGGAAGAAAAATTCCCAAAGGAAAATGGAGAGCGGCGTAGCAATGGCAATGGAGCCAACTATAGATCTGACAGAAGTGAAGGGAGGCAGCCTGATGTGATGGATGATCAACCAGGCAAATCTAGGTCTACTTTCCACTCTTGTCGCACACGTGAGAGCAGAAGTCCTAGCATTAGTCGAAAAAGGAGGTTGAGCAGAAGTCCAAGTGGTAGTAGAAGCCCTCAAGCTCCATTACGGAGGAGTTTGAGCAGGAGTCCAAGCAGAAGAAGCATCAGCAAAAGCCCAGCGAGAGGTAGAAAGGGGAAAAGTGTCAGTAAAAGCCCTGTGCGATCTCGTGGATATAGAAGTGTCAGTACAAGCCCTGTTAGATCCCTTTCTCAGAACCACCAGAGGACTTCATCCAGAGCACCATCACGAAGATCAATCAGTAGAAGCCCTGTGATTAATCATAATCATAGAAGTGTCAGTAGAAGTCCTGTTAGATATCGTGATCATAGAAGTGTTAGTGTAAGCCCTGCAAGATCTCTTTCCCGGAGCCGCAAGAGTTCACCCAGAGCACGATCACAAAGATCAATCAGCAGAAGCCCTGTGAGAACACACAATCATAGAAGTGTCAATAGAAGCCCTGTGAGATCTAGTGGTCGGAGAAGTGTCAGTGCAAGCCCTGTGAGACCTCTTTCTCGGAGCCGGAGGAGGAGTTCACCCAGGGCACCATCTCGAAGATCAATTAGTAGAAGTCCAGTGAAAACTGATATTCGTAGAAATGTTAGTAGAAGCCCTGTGAGATCTCATGGTCATAGAAGTGTGAGCGTAAGCCCTGTAAGATCGCCTTCTCGGGGCCGCAGGAGGAATTCACCCAGAGCACAATCACGAAGATCAATCAGCAGAAGCCCTGTAAGAGTGTCCAGAAAGACCATCAGCAGGAGTCCAGTTAGATCACCTGCCAGAAGCATGAGCAGAAGCTTGAGCAGAAGTTCTGGCAGAGTCCCTGTAAGAAGCATTAGCCGAAGTCCAGCTAGAGTGCCAAGCAGAGGCAATCGCCGCAGTTATTCTAGGAGTCCACGTGGTAGAAGCTTGTCTAGAAGTGTGTCACCTGATGTTTCCCCAAAACGTATTAGAAGGGGAAGAGGTTTCAGTGAACAGTACTCCTATGCTAGAAGGTATAGAACTCCCTCTCGATCTCCTGTGAGGTCGTACCGCTATAATGGAAGAAGTTACCGTGACAGATATTCAGGTTACAGGAGGTACTCCCCTAGGCGTAATAGGAGCCCACTTCCACGTAGAAGAACTCCACCAAGGTTCCGGAGGAGGAGCAGGACACCATCTGTATCACGCAGTCCCCGTTATCGAGGACGACGCTATAGCCGAAGCCGTAGCCCTGTTCGCAGTCGTTCACCTGTCGGTACATATCGACCTCGTGTTGAGAAGAGCAGGTCTTTGTCCAGGAGTAGAAGTCCATCACGATCCAGGGCTTCTATGGAATCACAATCTCCACTGAAGGCGAGCAGGAACAGTAGGTCAAGGTCCCCATCTGAAAGCCCAAATGCAAAGAAAGGCCTTGTATCCTACGGAGATGGTTCTCCCTATTCAAACTAA 2697 0.4575 MTKKKNCLVFMDVSIDGDPVERMVFELFYDVAPKTAENFRALCTGERGVGPNTGKSLHYKGSFFHQIVKGSIARELVEKAFMVPSSQVLTDCTCDVSDESPRLKHDAPGLLSMPVADRDTLGSHFIITFKADPHLDRKHVIFGKLVQGDKILKKIEDVGDEEGLPSVTVKIINCGEHNEDGKRINKSKKGRLGTTETHSPELHRGKHKKSSDDKRKRRKYYSSESSSSSDSDMRSSESDTDSDSDTSSSYTSSSSDDRRRKRKRPTPRQETKKTRQKVKTQIKKCNTIKKLADTEIVFGVRELTCHTDSDSDNKTGNSSGGESHGAQAKDQKHKDHSQKHAEGQASLVVEKELPAVLLTKGEKLNMLEEEKFPKENGERRSNGNGANYRSDRSEGRQPDVMDDQPGKSRSTFHSCRTRESRSPSISRKRRLSRSPSGSRSPQAPLRRSLSRSPSRRSISKSPARGRKGKSVSKSPVRSRGYRSVSTSPVRSLSQNHQRTSSRAPSRRSISRSPVINHNHRSVSRSPVRYRDHRSVSVSPARSLSRSRKSSPRARSQRSISRSPVRTHNHRSVNRSPVRSSGRRSVSASPVRPLSRSRRRSSPRAPSRRSISRSPVKTDIRRNVSRSPVRSHGHRSVSVSPVRSPSRGRRRNSPRAQSRRSISRSPVRVSRKTISRSPVRSPARSMSRSLSRSSGRVPVRSISRSPARVPSRGNRRSYSRSPRGRSLSRSVSPDVSPKRIRRGRGFSEQYSYARRYRTPSRSPVRSYRYNGRSYRDRYSGYRRYSPRRNRSPLPRRRTPPRFRRRSRTPSVSRSPRYRGRRYSRSRSPVRSRSPVGTYRPRVEKSRSLSRSRSPSRSRASMESQSPLKASRNSRSRSPSESPNAKKGLVSYGDGSPYSN 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02580 898 MobiDBLite consensus disorder prediction 303 898 - -
Vimu1g02580 898 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 9 176 - -
Vimu1g02580 898 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 11 175 IPR002130 GO:0000413|GO:0003755
Vimu1g02580 898 MobiDBLite consensus disorder prediction 429 459 - -
Vimu1g02580 898 MobiDBLite consensus disorder prediction 629 646 - -
Vimu1g02580 898 MobiDBLite consensus disorder prediction 573 595 - -
Vimu1g02580 898 SUPERFAMILY Cyclophilin-like 5 178 IPR029000 -
Vimu1g02580 898 MobiDBLite consensus disorder prediction 657 699 - -
Vimu1g02580 898 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Vimu1g02580 898 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 109 124 IPR002130 GO:0000413|GO:0003755
Vimu1g02580 898 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 124 136 IPR002130 GO:0000413|GO:0003755
Vimu1g02580 898 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 137 152 IPR002130 GO:0000413|GO:0003755
Vimu1g02580 898 MobiDBLite consensus disorder prediction 706 732 - -
Vimu1g02580 898 MobiDBLite consensus disorder prediction 412 426 - -
Vimu1g02580 898 MobiDBLite consensus disorder prediction 310 325 - -
Vimu1g02580 898 MobiDBLite consensus disorder prediction 326 341 - -
Vimu1g02580 898 MobiDBLite consensus disorder prediction 476 522 - -
Vimu1g02580 898 MobiDBLite consensus disorder prediction 178 281 - -
Vimu1g02580 898 MobiDBLite consensus disorder prediction 851 883 - -
Vimu1g02580 898 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 176 IPR002130 GO:0000413|GO:0003755
Vimu1g02580 898 MobiDBLite consensus disorder prediction 178 208 - -
Vimu1g02580 898 MobiDBLite consensus disorder prediction 363 378 - -
Vimu1g02580 898 MobiDBLite consensus disorder prediction 787 810 - -
Vimu1g02580 898 Gene3D - 1 177 IPR029000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02580 Vimu-Chr1 37324487 37330632 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02580 26 172 U-box Gene Family AT5G67530 31.250 2.54e-09 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02580 K09566 - gmx:100801588 645.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02580 1 37324487 37330632 Vimu1g02580 1 37324487 37330632 ECH