Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02577 ATGACATCAAGCCGAAGAAAGAAGACCAAAAAGATGTTTGGAATATGTGGTCATGATAATGAAAATGAAGAAGATAACGTAAACGATAGAGAAATCGAGGCAAGGGAAGATGGTAGCCAATACAGTCTCACAGGTGTTTTTCTTCCTTCTCTGGGTGCCACTGCCTTGACTAACGGTAGTCGGAGACAACAGCTTCGTCGTCATATCATCTTTCCATACAATCATAATTACAGGCTATGGAACAAGTTTCTGCTAATATTGGTCTTCTACACGGCTTGGATATGTCCATTTGAATTTGGTTTCCTTGAAAAATCAAAGGGTGCCTTAGCTGTAATCGACAACCTTGTAAATGGGTTTTTTGCCATTGACGTTGTACTCACCTTTTTCGTTGCTTACCTTGACAAGTCTACTTATCTATTAGTTGACGACCACAAACTCATTGCTTTGAGATATGCTAAATCTTGGTTGATTTTGGATGTCATTGCTTGCATTCCATATGAAGTTGTTCGCAGTATTTTGCCACCTAGTCTTCAGTCCTATAGTTACTTAAGTATTCTCCGACTTTGGCGTCTTCATCGAGTTAGTGCCATGTTTGCAAGATTGGAAAAGGATCGGAATTATAGCTACTTTTGGGTGCGTTGTTGCAAGCTTACATGTGTTACTCTATTCTCAGTGCATGCTGCAGCATGTTTTTTCTATTTTCTTGCTGTGAGAGATGATCCAAAAGATACATGGCTTTCACTTGTTCCTACAACCACCAACCAAGATATATGGGGAAAGTACGTAGTAGCTGTATATTGGTCCATAGTCACCCTTGCATCAGTTGGCTATGGTGATCTACATCCAGTAAATACAAAAGAAATGATATTTTGCATTTTTTATATGTTCTTCAACCTTGGACTCACCTCATACTTGATAGGCAACATGACCAACATGGTTGTCCATTGGACTGAAAGAACTAAAAGATATAGAGACACTGTCCAATATGCCTCAAATTTTGCTCATAGGAATCAATTACCTGCTCGTTTGCAAGAACAAATATTTGCTCATTTGCTTATGAGGTATAGAGCTGATATAGAAGGAGTACAACAACAAGAGATTATTGATTCCCTTCCAAAAGCCATTCAGTCAAGCATCGCACAATACTTATTCTTTTCACTTATTGACAAAGTCTACTTATTTCATGGAGTGTCAAATGACCTACTTTTTCAAATGGTTACAGAGATGAAGGCTGAGTATTTTCCTCCAAAGGAAGATGTGATTTTGCAAAATGAAGCACCAACAGAATTTTATATATTCGTTACAGGAGCTGCTATTGTTGGAGAAGTAAGGCAAGGAGATGTGGTTGGTGAAATAGGAGTCTTGTGTTATAAACCACAATTGTTCACCGTCCGAACCAAGCGATTGAGCCAAATCTTACGTTTGAATCGAACCACATTTATAAATCTTACTCGTTCAAATGTTGGAGATGGAACAATGATCATAAACAATTTTCTTCAACATTTACATGAAATTGGGAGTCCAATTATGGAAGAAATTTTGGCAGAAGCAGAAGGAATGTTGGCTAGGGGAAAAATGGATTTGCCAATTAGTTTATTGTTTGCAGCTAGTAGAGGTGATGATATCATGTTGAATCAATTGTTAAAGAAGGGTTCAGATCCAAATGAACCGGACAAGAATGGAAAGACAGCATTGCATATTGCAGCTTGCAAAGGAAACGACCACTGTGTACTTGTGCTTGTGGAACATGGAGCAAATCCCAACATCAAAGACCTAGAAGGAAATTCGCCACTGTGGGAAGCAATTAAGGGTGGACATGAAACTGTGATGAAAATTCTTTTAGAAAATGGTGCAGAAATAACATCTAATGATGTAGTTGAATTTGCACGATTGGCTATTGAGAAAAACAACCTAGAAATAGTGAAGGAAATAATTCAACGTAAAGGGGAAGTGACAGAAAGTGATAGTAAATTAACCACACTGCTTCATGCTGCAGTGTGTGAGGGAAATGCTGAAATAGTGAAGTACCTTATAGAACTAGGAGCAGACATTGATAGACAAGATGATGTTGGGTTGACTGCAAGATCTTTAGCAGAACATCAATGTCATGAGGAAATACTAAACATTTTTAAGAAAATTGGACACAACAATAAACCAAATGCTCTTCCTCCTATTTCATCAATTGCTGGTAGGTGTCAAAGTGAACCTACAATACCAGTCATTCTCCAACCCAACAAACCACCTAATAAAGAACTCACCTGGTTTGATAAACATCAAAGAAGAAGGGTCAGTCCTTTCCACAATTCCTTTTTTGGAATCATGTCATCTGCAAATTATGCAACAAAAGAATCACCAAAAGATTCACCAAAATCATCTCAAATGAGTCATATTAAAGAGGAAGTAACAATGAGAATAACACTTAGTTGTCCAGAGAAAGGTGAAGGTGCCAAGAAGCTTCTGGTTTTGCCAGATTCTATTGAAGAAATACTACGAATTGGTGCTAAAAAGTTTGGTTGTTCTCCGACCAAAATATTGACCACAGAAGGAGCTCAAATTGATGACATAGATGTTATAAGAGATGGTGATCATCTTGTTCTTGCATAG 2604 0.3783 MTSSRRKKTKKMFGICGHDNENEEDNVNDREIEAREDGSQYSLTGVFLPSLGATALTNGSRRQQLRRHIIFPYNHNYRLWNKFLLILVFYTAWICPFEFGFLEKSKGALAVIDNLVNGFFAIDVVLTFFVAYLDKSTYLLVDDHKLIALRYAKSWLILDVIACIPYEVVRSILPPSLQSYSYLSILRLWRLHRVSAMFARLEKDRNYSYFWVRCCKLTCVTLFSVHAAACFFYFLAVRDDPKDTWLSLVPTTTNQDIWGKYVVAVYWSIVTLASVGYGDLHPVNTKEMIFCIFYMFFNLGLTSYLIGNMTNMVVHWTERTKRYRDTVQYASNFAHRNQLPARLQEQIFAHLLMRYRADIEGVQQQEIIDSLPKAIQSSIAQYLFFSLIDKVYLFHGVSNDLLFQMVTEMKAEYFPPKEDVILQNEAPTEFYIFVTGAAIVGEVRQGDVVGEIGVLCYKPQLFTVRTKRLSQILRLNRTTFINLTRSNVGDGTMIINNFLQHLHEIGSPIMEEILAEAEGMLARGKMDLPISLLFAASRGDDIMLNQLLKKGSDPNEPDKNGKTALHIAACKGNDHCVLVLVEHGANPNIKDLEGNSPLWEAIKGGHETVMKILLENGAEITSNDVVEFARLAIEKNNLEIVKEIIQRKGEVTESDSKLTTLLHAAVCEGNAEIVKYLIELGADIDRQDDVGLTARSLAEHQCHEEILNIFKKIGHNNKPNALPPISSIAGRCQSEPTIPVILQPNKPPNKELTWFDKHQRRRVSPFHNSFFGIMSSANYATKESPKDSPKSSQMSHIKEEVTMRITLSCPEKGEGAKKLLVLPDSIEEILRIGAKKFGCSPTKILTTEGAQIDDIDVIRDGDHLVLA 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02577 867 ProSiteProfiles Ankyrin repeat region circular profile. 560 591 - -
Vimu1g02577 867 Gene3D Jelly Rolls 358 504 IPR014710 -
Vimu1g02577 867 FunFam Potassium channel KAT2 381 505 - -
Vimu1g02577 867 PRINTS EAG/ELK/ERG potassium channel family signature 124 133 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu1g02577 867 PRINTS EAG/ELK/ERG potassium channel family signature 287 298 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu1g02577 867 PRINTS EAG/ELK/ERG potassium channel family signature 305 314 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu1g02577 867 PRINTS EAG/ELK/ERG potassium channel family signature 113 123 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu1g02577 867 PRINTS EAG/ELK/ERG potassium channel family signature 90 97 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu1g02577 867 PRINTS EAG/ELK/ERG potassium channel family signature 261 278 IPR003938 GO:0005249|GO:0006813|GO:0016020
Vimu1g02577 867 ProSiteProfiles cAMP/cGMP binding motif profile. 393 501 IPR000595 -
Vimu1g02577 867 Pfam KHA, dimerisation domain of potassium ion channel 804 866 IPR021789 -
Vimu1g02577 867 SMART ANK_2a 624 653 IPR002110 GO:0005515
Vimu1g02577 867 SMART ANK_2a 657 686 IPR002110 GO:0005515
Vimu1g02577 867 SMART ANK_2a 527 556 IPR002110 GO:0005515
Vimu1g02577 867 SMART ANK_2a 560 589 IPR002110 GO:0005515
Vimu1g02577 867 SMART ANK_2a 593 622 IPR002110 GO:0005515
Vimu1g02577 867 ProSiteProfiles Ankyrin repeat region circular profile. 593 624 - -
Vimu1g02577 867 Pfam Ankyrin repeats (3 copies) 532 624 IPR002110 GO:0005515
Vimu1g02577 867 Pfam Ankyrin repeats (3 copies) 631 688 IPR002110 GO:0005515
Vimu1g02577 867 FunFam Potassium channel KAT3 79 315 - -
Vimu1g02577 867 ProSiteProfiles Ankyrin repeat profile. 657 689 IPR002110 GO:0005515
Vimu1g02577 867 CDD CAP_ED 393 487 IPR000595 -
Vimu1g02577 867 SMART cnmp_10 393 499 IPR000595 -
Vimu1g02577 867 MobiDBLite consensus disorder prediction 13 27 - -
Vimu1g02577 867 ProSiteProfiles Ankyrin repeat profile. 560 592 IPR002110 GO:0005515
Vimu1g02577 867 MobiDBLite consensus disorder prediction 1 27 - -
Vimu1g02577 867 ProSiteProfiles Ankyrin repeat profile. 593 625 IPR002110 GO:0005515
Vimu1g02577 867 Pfam Cyclic nucleotide-binding domain 413 486 IPR000595 -
Vimu1g02577 867 SUPERFAMILY Voltage-gated potassium channels 72 314 - -
Vimu1g02577 867 SUPERFAMILY Ankyrin repeat 531 715 IPR036770 -
Vimu1g02577 867 PANTHER POTASSIUM CHANNEL AKT1 39 866 IPR045319 GO:0005249|GO:0006813
Vimu1g02577 867 PRINTS Ankyrin repeat signature 673 687 IPR002110 GO:0005515
Vimu1g02577 867 PRINTS Ankyrin repeat signature 561 576 IPR002110 GO:0005515
Vimu1g02577 867 Pfam Ion transport protein 78 320 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vimu1g02577 867 SUPERFAMILY cAMP-binding domain-like 318 502 IPR018490 -
Vimu1g02577 867 Gene3D - 80 314 - -
Vimu1g02577 867 ProSiteProfiles KHA domain profile. 804 867 IPR021789 -
Vimu1g02577 867 ProSiteProfiles Ankyrin repeat region circular profile. 657 689 - -
Vimu1g02577 867 Gene3D - 529 712 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02577 Vimu-Chr1 37216125 37227280 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02577 21 867 Ion Channels AT2G25600 55.149 0.0 949
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02577 K21867 - gmx:100808832 1304.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02577 1 37216125 37227280 Vimu1g02577 1 37216125 37227280 ECH