Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02576 ATGGAGCCTTTTGAAGGAGTCATTAAGGATTTCAAAGGAAGGGCTGCTTTCTATAAACATGATTGGACCAGTGCATTATGTTCTGGGATTAAGATATTGGCTCCAACTTTCTACATATTCTTCGCTTCAGCTCTTCCTGTTATTGCTTTTGGGGAACAACTTAACAGGGACACAGGTAAAACTTTTCTTCAACAATCTGTAGTTACTTTCAGTGGCCAATGCTATGCTTTTTGTTCCATAACCAAGTATCCATATCATGTTTTTACAGGTGGAAGCTTAAGTACAGTTGAAACACTAGCATCAACTGCTATTTGTGGAATTATCCACTCAATAGTTGGTGGTCAGCCTATGTTGATTTTGGGAGTTGCTGAACCAACTGTTATAATGTACACTATTCTGTATCAGTTCTGCACAAAAAGTCCAGATCTTGGTGTTGAGATGTTTTTGCCTTGGGCTGGATGGTTCACAAGACTGGCAGAGGAATTATTTGGCATGTTAATCACTGTCCTTTTCTTCCAAGAAGCTATAAGGGGAATCAAGGGTGAATTCGGTACACCCATATCAGAAAATCCTTCTGCAGAGGAACATCAATTCCAATGGCGTCATTTTCTCTTTTGGAATACTTCTCACTGCCATGCTCAGCAGAAGAGCAAGAACATGGAGATATGGAACAGGCAAGTGCCTCCAAGGTGGATGCGAGCTATTGTTGCAGATTATGGGATTCCATTGATGGTTATGCTTTGGACTGGACTATCCTATACTGTACCCGACAAAGTTCCTTCTGCTGTTCCTAGAAGGCTGGATATGGGAAAGGTACCTGTGCTTTACATCTTTGCAGCATTTATTCCAGCTGTGATGGTAGCAGGATTATACTTCTTTGATCATAGTGTAGCTTCTAAGATGGCTCAACAGAAGGAATACAATCTTCAAAAGCCAAGTGCTTATCATTATGATATGTTCCTTCTTGGTATACTGACTCTGATTTGTGGTTTACTTGGCCTTCCTCCATCAAATGGAGTCCTTCCTCAGTCTCCCATGCATACAAAGAGTTTGGCAGTTCTCAGGAGGCAGATGGTCCGAAAAAAGGTGGTAAAAAGTGCCAAGGATTGCATTAAGCAACAAGGAACAAACATTGAATTATTTGGAAAGATGCAAGATACTCAAGACCTGAAGAATTTGAAGGAGACTGTAATGCAATCTTCTGATAATAATGGAGAAACGCATACATTTGATCCTGAGAAACACATCGATGCCTACATACCTGAACGTGTTAATGAGCAAAGAATTAGTAACTTATTGCAGTCTCTCCTGGTTGGTCTATCAATTTTTGCCATTTCTGTCATCAAAATGATACCTACTCCAGTTCTGTGGGGATATTTTGCATACATGGCTATTGATAGTCTACCAGGGAATCAATTCTGGGAAAGAATATTGCTTCTCTTCATCTCACCAAGCCGGCGCAACAAAATTTTGGAAGGTCCTCATGCTTCGTTTGTGGAATCAGTGCCATTCAAGACCATAGCCATGTTCACAGTGTTGCAGTGTGTGTACTTTTTAATATGTTATGGAGTGCAATTGATACCTATAGGAGGAATACTTTTCCCATTACCTTTCTTCCTTCTCATACCCATAAGAGAGCACTTGCTTCCCCACATATTCAAGCCTATTGATCTTCAAGAACTAGATGCTGCTGAGTATGAGGAAATTCTTGGAGTTCCAAATTCGATGAAAGATCCATGTCTGGATGACAACAACGCCGAGATATTGGATCAGATAACAACTTACAGAGGAGAATTAAAGCATAGAACTGTAAGCCAAAGGAGAAACAGAAGCTTCAATGAAGACGATCCAGATATTTATCTATAA 1866 0.4019 MEPFEGVIKDFKGRAAFYKHDWTSALCSGIKILAPTFYIFFASALPVIAFGEQLNRDTGKTFLQQSVVTFSGQCYAFCSITKYPYHVFTGGSLSTVETLASTAICGIIHSIVGGQPMLILGVAEPTVIMYTILYQFCTKSPDLGVEMFLPWAGWFTRLAEELFGMLITVLFFQEAIRGIKGEFGTPISENPSAEEHQFQWRHFLFWNTSHCHAQQKSKNMEIWNRQVPPRWMRAIVADYGIPLMVMLWTGLSYTVPDKVPSAVPRRLDMGKVPVLYIFAAFIPAVMVAGLYFFDHSVASKMAQQKEYNLQKPSAYHYDMFLLGILTLICGLLGLPPSNGVLPQSPMHTKSLAVLRRQMVRKKVVKSAKDCIKQQGTNIELFGKMQDTQDLKNLKETVMQSSDNNGETHTFDPEKHIDAYIPERVNEQRISNLLQSLLVGLSIFAISVIKMIPTPVLWGYFAYMAIDSLPGNQFWERILLLFISPSRRNKILEGPHASFVESVPFKTIAMFTVLQCVYFLICYGVQLIPIGGILFPLPFFLLIPIREHLLPHIFKPIDLQELDAAEYEEILGVPNSMKDPCLDDNNAEILDQITTYRGELKHRTVSQRRNRSFNEDDPDIYL 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02576 621 Pfam HCO3- transporter family 89 139 IPR011531 GO:0006820|GO:0016020
Vimu1g02576 621 Pfam HCO3- transporter family 229 357 IPR011531 GO:0006820|GO:0016020
Vimu1g02576 621 Pfam HCO3- transporter family 3 67 IPR011531 GO:0006820|GO:0016020
Vimu1g02576 621 Pfam HCO3- transporter family 423 513 IPR011531 GO:0006820|GO:0016020
Vimu1g02576 621 Gene3D Helical hairpin bin 14 56 - -
Vimu1g02576 621 PANTHER ANION EXCHANGE PROTEIN 155 569 IPR003020 GO:0005452|GO:0006820|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02576 Vimu-Chr1 37206270 37210845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02576 3 611 Antiporters AT4G32510 52.388 0.0 710
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02576 K24194 - gmx:100808880 778.474
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02576 1 37206270 37210845 Vimu1g02576 1 37206270 37210845 ECH
Vimu10g02922 10 40296388 40300239 Vimu1g02576 1 37206270 37210845 ECH
Vimu1g02576 1 37206270 37210845 Vimu10g02922 10 40296388 40300239 PCT