Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02570 ATGTCTTCGACGATTGTGGCATATTCGAGTTCTTGGAGCAGGGCACTTGTCGCGATCTCGCCCTACACCTTCGCCGCCATCGGTATCGCGGTCGCAATCGGCGTCTCCGTCCTCGGCGCCGCCTGGGGGATCTACATCACCGGTAGTAGCTTGATCGGCGCTGCAATCAAGGCTCCTCGAATCACTTCCAAAAATCTCATTAGTGTGCAGGTGAGAGAGGCGAGGTGTGAATGCATACCCATTGCAGTATTACAAGTTTACAAATTACAATTGCACAGCGGCGGTGCTTTTGCTGGGTATTGGGCATTAGTCTCACCCCGCATAATAAGCAGTGATAATCTTTCTTCATCATTGGGAGTAAGTGATCCTGTTGCTATATATGGTGTTATTGTGGCTATTATTCTTCAAACAAAATTAGAAAGTGTTCCAACAGAAAATATCTACGACCCAGAGTCTCTTAGGGCTGGATATGCAATCTTTGCTTCTGGATTAATCGTGGGCTTCGCAAATCTTGTTTGTGGGGGGGACCTTTTCCATGTTGTTGTCACATTCAATTTTTTCCCCTCTGGCAGGTTGTGTGTAGGAATAATCGGAAGCAGCTGTGCTTTATCTGATGCTCAGAATTCCTCCCTCTTCGTGAAAATTCTTGTGATTGAGATCTTTGGTAGCGCGCTTGGGCTATTTGGAGTGATTGTTGGAATTATTATGTCAGCACAGGCAACATGGCCAACAAAAGTTTAG 741 0.4629 MSSTIVAYSSSWSRALVAISPYTFAAIGIAVAIGVSVLGAAWGIYITGSSLIGAAIKAPRITSKNLISVQVREARCECIPIAVLQVYKLQLHSGGAFAGYWALVSPRIISSDNLSSSLGVSDPVAIYGVIVAIILQTKLESVPTENIYDPESLRAGYAIFASGLIVGFANLVCGGDLFHVVVTFNFFPSGRLCVGIIGSSCALSDAQNSSLFVKILVIEIFGSALGLFGVIVGIIMSAQATWPTKV 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02570 246 Pfam ATP synthase subunit C 160 236 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vimu1g02570 246 Pfam ATP synthase subunit C 27 69 IPR002379 GO:0015078|GO:0033177|GO:1902600
Vimu1g02570 246 Gene3D - 188 243 IPR035921 -
Vimu1g02570 246 Gene3D - 91 184 IPR035921 -
Vimu1g02570 246 SUPERFAMILY F1F0 ATP synthase subunit C 20 74 IPR035921 -
Vimu1g02570 246 SUPERFAMILY F1F0 ATP synthase subunit C 152 237 IPR035921 -
Vimu1g02570 246 CDD ATP-synt_Vo_c_ATP6F_rpt2 155 236 - -
Vimu1g02570 246 PANTHER V-TYPE PROTON ATPASE PROTEOLIPID SUBUNIT 192 240 - -
Vimu1g02570 246 Gene3D F1F0 ATP synthase subunit C 22 83 IPR038662 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02570 Vimu-Chr1 37131754 37134266 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02570 6 245 Primary Pumps ATPases(2) AT4G32530 60.870 8.47e-84 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02570 K03661 - gmx:100778175 268.855