Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02558 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTATATCCATGATTACCTAGTGAAGAGGGATTTGAAGGCCTCAGCTGAGGCTTTTCAAGCTGAAGGGAAAGTGTCGTCGGACCCTGTTGCTATTGATGCACCCGGAGGATTTCTGTTCGAGTGGTGGTCTGTTTTCTGGGACATATTTATTGCCAGGACCAATGAGAAGCACTCTGAGGTTGCTGCATCTTATATTGAGCTTCAAACTGTGCATCTTACTAGTGTATGGCTCGGTTTAGCTGCTGGGGAAATTTGGGATCTTTAG 306 0.4477 MSQTNWEADKMLDVYIHDYLVKRDLKASAEAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSEVAASYIELQTVHLTSVWLGLAAGEIWDL 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02558 101 Pfam LisH 10 36 IPR006594 GO:0005515
Vimu1g02558 101 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 85 - -
Vimu1g02558 101 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Vimu1g02558 101 SMART Lish 8 40 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02558 Vimu-Chr1 37007560 37008809 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Vimu1g02558 LisH 2.8e-08 CL0561
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02558 - - dcr:108209266 169.859