Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02555 ATGCATGGTATAAGAGGAACTAACAAAACTGGTGCCAGACTGACTGACACAAGTCCATCAGAGCTGCAACAAGAGACACCACTTTGGTCTGGTCAACCAAGACTTGGAGATAAAAACAAAAAGCATGGAATCCAAAAGGGTGGCTCCAACTATGGTAGCACTTATGCTGCTGCAGCTCTGATGGCCTTGTGCCAATGGTTCACTTTATTTTCAGGTTTTACATTTTCTGAGGTGAATTCTGTACGTGCAAGCACTAACAAAGTTGTCTGTTGCCATTTCTCGTCTGATGGGAAATTGCTTGCTAGTGGTGGACATGACAAAAAGGCTGTTTTATGGTTCACAGATACTCTACAGCAAAAGGCTACTCTTGAAGAGCATGCTTCTTTAATCACTGATGTTCGTTTCAGTCCAAGCATGCCTCGCCTTGCAACATCTTCATATGACAGAACTGTCAGGGTGTGGGATGTTGATAATTTATATGTGATCTGGAAAGTTTTTCTAGTTATTGTGGGTAGATTTGAATGCCAGCCTGGATATACGCTTCGAAGTTTTACTGGTCATTCTGCATCTGTTATGTCACTAGATTTTCACCCTAATAAAGATGACCTTATCTGCTCTTGTGATGTCGATGGTGAGATCCGATATTGGAGTATTAAGAATGGAAATTGTGCTAGAGTCTCAAAGGGTGGCACTGCTCAGATGAGATTTCAACCTCGTCTAGGGAGGTACCTAGCTGCAGCTGCTGAGAATGTTGTTTCAATACTTGATGTGGAAACACAAGTATGTCGATATTCATTAAAGGGACATACAAAATCAATACATTCAGTGTGTTGGGATCCTTCTGGGGAGTTCCTGGCATCTGTCAGTGAGGACTCTGTAAGGGTTTGGACTCTTGGATCAGGGAGTGAAGGGGAGTGTGTTCACGAGCTTAGCTGCAATGGCAATAAATTTCACTCGTGTGTTTTCCATCCAACATATTCTTCGCTTTTGGTAGTTGGTTGTTACGAGGCAAGACTACATCCTTCTCTTACTTCATTGGAGCTCTGGAACATGACTGAGAACAAGACAATGACTCTATCCGCTCATGAAGGTCTTATTGCCGCATTGGCAGTTTCCACTGTAAATGGTTTGGTTGCTTCAGCCAGTCATGACAAGTTTGTGAAGCTATGGAAGTGA 1176 0.4277 MHGIRGTNKTGARLTDTSPSELQQETPLWSGQPRLGDKNKKHGIQKGGSNYGSTYAAAALMALCQWFTLFSGFTFSEVNSVRASTNKVVCCHFSSDGKLLASGGHDKKAVLWFTDTLQQKATLEEHASLITDVRFSPSMPRLATSSYDRTVRVWDVDNLYVIWKVFLVIVGRFECQPGYTLRSFTGHSASVMSLDFHPNKDDLICSCDVDGEIRYWSIKNGNCARVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVETQVCRYSLKGHTKSIHSVCWDPSGEFLASVSEDSVRVWTLGSGSEGECVHELSCNGNKFHSCVFHPTYSSLLVVGCYEARLHPSLTSLELWNMTENKTMTLSAHEGLIAALAVSTVNGLVASASHDKFVKLWK 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02555 391 PRINTS G protein beta WD-40 repeat signature 378 391 IPR020472 -
Vimu1g02555 391 PRINTS G protein beta WD-40 repeat signature 142 156 IPR020472 -
Vimu1g02555 391 PRINTS G protein beta WD-40 repeat signature 100 114 IPR020472 -
Vimu1g02555 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 123 158 - -
Vimu1g02555 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 359 391 - -
Vimu1g02555 391 ProSitePatterns Trp-Asp (WD) repeats signature. 142 156 IPR019775 -
Vimu1g02555 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 81 112 IPR001680 GO:0005515
Vimu1g02555 391 FunFam Transcriptional corepressor LEUNIG 227 391 - -
Vimu1g02555 391 CDD WD40 77 391 - -
Vimu1g02555 391 Gene3D - 49 229 IPR015943 GO:0005515
Vimu1g02555 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 359 391 IPR001680 GO:0005515
Vimu1g02555 391 MobiDBLite consensus disorder prediction 1 43 - -
Vimu1g02555 391 Pfam WD domain, G-beta repeat 354 391 IPR001680 GO:0005515
Vimu1g02555 391 Pfam WD domain, G-beta repeat 119 155 IPR001680 GO:0005515
Vimu1g02555 391 Pfam WD domain, G-beta repeat 262 296 IPR001680 GO:0005515
Vimu1g02555 391 Pfam WD domain, G-beta repeat 81 112 IPR001680 GO:0005515
Vimu1g02555 391 Pfam WD domain, G-beta repeat 180 217 IPR001680 GO:0005515
Vimu1g02555 391 Gene3D - 230 391 IPR015943 GO:0005515
Vimu1g02555 391 PANTHER TRANSCRIPTIONAL REGULATOR OF FILAMENTOUS GROWTH FLO8 72 391 IPR044716 GO:0003714
Vimu1g02555 391 MobiDBLite consensus disorder prediction 10 30 - -
Vimu1g02555 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 266 306 IPR001680 GO:0005515
Vimu1g02555 391 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 184 222 - -
Vimu1g02555 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 184 226 IPR001680 GO:0005515
Vimu1g02555 391 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 158 IPR001680 GO:0005515
Vimu1g02555 391 SMART WD40_4 352 391 IPR001680 GO:0005515
Vimu1g02555 391 SMART WD40_4 303 350 IPR001680 GO:0005515
Vimu1g02555 391 SMART WD40_4 116 155 IPR001680 GO:0005515
Vimu1g02555 391 SMART WD40_4 177 217 IPR001680 GO:0005515
Vimu1g02555 391 SMART WD40_4 74 113 IPR001680 GO:0005515
Vimu1g02555 391 SMART WD40_4 259 297 IPR001680 GO:0005515
Vimu1g02555 391 SUPERFAMILY WD40 repeat-like 74 391 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02555 Vimu-Chr1 36987194 36994647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02555 85 353 U-box Gene Family AT2G33340 27.536 2.58e-17 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02555 - - gmx:100779972 568.926
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02555 1 36987194 36994647 Vimu10g02914 10 40213276 40221446 PCT