Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02551 ATGGCTCAGCAAAACAATGCCAACAACAACGTTGTGACCCAACAACAACATCAACAGCTTCTGAAGCCCATGTTCCATGACTTTCTTGGCACTAAGAGCACCAACCCCATTCACTCCAATGTGCTCCATGCCCCCCAAACCTCTCATCTTTACGTCCCCCGCTCCTCCCTATCTTCCACCACCGTGTTCAGCGGCGCTGCCACCTCCCACCTCGCTTCCGGTGAGCCGGTTCCACCCCCATTTGCTTCAAAACTCCATCTTTTCTTCTCCCCGCAAACCCCATGTGCTGCATTTTCGAGGATTGGGAATCATCTTGAGGGAGTTCCATTCTATGGTCCGAACAGGGAACTCTGTGGCATTGAGATAGCTAACAGAGTAGTGAGAAAGAAGAAAAGTAATTCTGATACCACTTTTACCTTTTCTTCCAGAGATTCCTTCCAAATGGTCCCTCATTCCCTTCCAAATTCACATTCGGTGAAGATGCTTCGGAATGCAGCTACTTCTGATTGCCTTAGAAGGTCTAATGGTGATGATGTGTTTCTTCCTATGCAGTCACTGAAGCCAACAACCAGTGGCTCTCAGATATTGCAGACTCCCACTGGAACTAAGTCTGATGCAAATAAATTGGAAAGATCAATTCTCATGAATTTTGGTCCTTTCATGCAGTTAGCTCCTCTTATGGACCAAAGAACTTCAAACAAGATGGGTGATACCAGTGCTGCTCCTTCATTTATCTCTCAGTTAGCTGCTGATGAAGGGTCTAGAACCAGAATCAAGGGTCCTGGGCTTTTCAGTTCCATTAACACAATCAATGCAGTCACTGAGAAGACTTCTTCCATGCTTGGTGGCAGCATAGCAAATTCTGTGACAAACATAGTAGATCCTGAATGTTCCACAATTCTGAATCAACGTGGCTCATCATCTGCCACCTGTCAGATGACTATCTTTTATGGAGGTCAAGCTCATGTGTTTGATGATGTACACCCTAATAAGGCTGATGTTATAATGGATTTAGCTGGCTCTAATGGTGGATCTTGGGCCACAGCATTCTCTTCCAAATCTTCTGTAAAGCTACACCATGATAGTAACTTGGAAAGAAATTCTAGTCATCATGCCACTGAACCAGGTGGTCAACTGACTTCTACAACAGGCCCAACAACCTCTAAGATAAAAGGCCCGAGAGATGAAATATCTCTTGTGAGAGCTTCTGCAAGAGAAGCAACCCTTGCCATGCGAAAAGAAAGAGAGAGAGAGCTCGAGGCTCTTCTGGAAGCTTGGAGAGAGAAGAGACGTAGAGCTCACTGTGAGCATGCAACCATGGCTGTTGGGAGAAGAAGAGAAGAACTGATGGGGAAGTGCATATCAAGAACCTCACAAGGGCTTCATCAAAGGTAA 1395 0.4566 MAQQNNANNNVVTQQQHQQLLKPMFHDFLGTKSTNPIHSNVLHAPQTSHLYVPRSSLSSTTVFSGAATSHLASGEPVPPPFASKLHLFFSPQTPCAAFSRIGNHLEGVPFYGPNRELCGIEIANRVVRKKKSNSDTTFTFSSRDSFQMVPHSLPNSHSVKMLRNAATSDCLRRSNGDDVFLPMQSLKPTTSGSQILQTPTGTKSDANKLERSILMNFGPFMQLAPLMDQRTSNKMGDTSAAPSFISQLAADEGSRTRIKGPGLFSSINTINAVTEKTSSMLGGSIANSVTNIVDPECSTILNQRGSSSATCQMTIFYGGQAHVFDDVHPNKADVIMDLAGSNGGSWATAFSSKSSVKLHHDSNLERNSSHHATEPGGQLTSTTGPTTSKIKGPRDEISLVRASAREATLAMRKERERELEALLEAWREKRRRAHCEHATMAVGRRREELMGKCISRTSQGLHQR 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02551 464 MobiDBLite consensus disorder prediction 369 389 - -
Vimu1g02551 464 SMART tify_2 306 341 IPR010399 -
Vimu1g02551 464 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 221 415 IPR040390 -
Vimu1g02551 464 MobiDBLite consensus disorder prediction 358 394 - -
Vimu1g02551 464 ProSiteProfiles Tify domain profile. 306 341 IPR010399 -
Vimu1g02551 464 Pfam tify domain 308 340 IPR010399 -
Vimu1g02551 464 Coils Coil 416 436 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02551 Vimu-Chr1 36926314 36930445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02551 1 339 Tify Gene Family AT4G32570 31.672 3.31e-32 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vimu1g02551 tify 1.7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02551 - - pcin:129294719 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02551 1 36926314 36930445 Vimu10g02891 10 40064194 40071342 PCT