Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02548 ATGGATAGAGAGAATGCTGTAATCGGTGTGAAAGACAGTGTTCGAGTGACGCGAGCAATGGCGAGAGCTTTGAGAGAGGTCTCTGCCTCTTCAAGACCATGCTTTAAGAAACAGAGAAAAGTGGAAAAGAGGAACAGAGCAGCGCTGACAGATGTAACCAATGAATACAGAAAACCGCAGCTCAATAAGTGCGCTGTGCCCAGTTTTCAGACAAGAGGAGGTTGTAAGAAGCGAAACACAGTTGGAGCTTCCAATGTCTCTATGCAAGTTTGGTCAACTCAAGATGTTAGAACAAAGTCAGCAAAAGATTTATCTGTAATATCGATGGTACATTCACATGAACCTGTTGTTGCTGAAAGGCTGGAAGACAGAGAGCTAGTGCCACCTTCTATGTCTGTCATGGATGGTCCCCAGCTTTCAATGCAGGACTCTATGCAGTCTGATGAACTCCTTAGCTCTCCGAACAAAGATATTGATATGATTTCAGAGAAACTAAAGCATTCGGATGGTTTGGGCATTGTGGACATTGATTCAGTGGAGTTAAAGGATCCTCAAGTTTGGAGTTCATATGCCCCTGATATATACAATAATATATGTGTCAGAGAGTTTGAAAGGAGACTAACCAATTACATGGGCGAGCTGCAGAAAGACATCACTCCAAGCATGCGCGCAATTCTGATTGATTGGCTTGTGGAGGTTTCTGAGGAATATAAGTTAGTTCCAGATACTCTTTACCTTACTGTGAATCTCATTGATCGGTTTCTTTCTCAAAGTTTGATTCAGAAACAAGGACTACAGTTGCTGGGTGTTACTTGCATGCTGATTGCATCAAAGTATGAAGAGATCTGTGCCCCTCGAGTGGAAGAATTTTGCTTCATCACAGATAATACGTACTCAAAAGCAGAGGTATTGAAAATGGAGAGTGAGGTTCTAAATCTGTTGCATTTTCAATTATCTGTTCCCACCACTAAAACATTTCTCAGGAGGTTCATCCTAGCAGCACAATATTCTTGTAAGGTTTCTTACGTTGAAGTGGAATTTCTGGCAAACTATTTAGCAGAACTCACTCTTGTTGAATACAGCTTCTCGCAGTTTCGACCATCCATGATAGCTGCGTCTGCTGTTTTACTAGCCAGATGGACCCTCAACCAGTCAGAACATCCATGGAATTCAACTATGGAACACTATACGAATTACAAAGTGTCAGAACTTAAAACTACTGTACTTGCACTGGCAGATTTGCAACTTAATACCAAAGGCTGTCCTCTGAATGCTATACGTGAAAAATATAAACAGCAAAAGTTCATGAGTGTGGCAAATTTGTCTCCAAAACCAGTGCAGACACTTTTTGAGGCTAAGTATAAAGTTGTAAATGATGGTATCTCAGAAGACTAA 1395 0.4115 MDRENAVIGVKDSVRVTRAMARALREVSASSRPCFKKQRKVEKRNRAALTDVTNEYRKPQLNKCAVPSFQTRGGCKKRNTVGASNVSMQVWSTQDVRTKSAKDLSVISMVHSHEPVVAERLEDRELVPPSMSVMDGPQLSMQDSMQSDELLSSPNKDIDMISEKLKHSDGLGIVDIDSVELKDPQVWSSYAPDIYNNICVREFERRLTNYMGELQKDITPSMRAILIDWLVEVSEEYKLVPDTLYLTVNLIDRFLSQSLIQKQGLQLLGVTCMLIASKYEEICAPRVEEFCFITDNTYSKAEVLKMESEVLNLLHFQLSVPTTKTFLRRFILAAQYSCKVSYVEVEFLANYLAELTLVEYSFSQFRPSMIAASAVLLARWTLNQSEHPWNSTMEHYTNYKVSELKTTVLALADLQLNTKGCPLNAIREKYKQQKFMSVANLSPKPVQTLFEAKYKVVNDGISED 464
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02548 464 Pfam Cyclin, C-terminal domain 321 443 IPR004367 -
Vimu1g02548 464 FunFam Cyclin A1 308 440 - -
Vimu1g02548 464 SUPERFAMILY Cyclin-like 320 443 IPR036915 -
Vimu1g02548 464 FunFam Mitotic cyclin 6 207 306 - -
Vimu1g02548 464 Gene3D - 193 440 - -
Vimu1g02548 464 Pfam Cyclin, N-terminal domain 193 319 IPR006671 -
Vimu1g02548 464 PIRSF Cyclin_A_B_D_E 8 456 IPR046965 GO:0016538|GO:0044772
Vimu1g02548 464 SUPERFAMILY Cyclin-like 182 318 IPR036915 -
Vimu1g02548 464 CDD CYCLIN_AtCycA-like_rpt2 321 435 - -
Vimu1g02548 464 PANTHER CYCLINS 152 432 IPR039361 -
Vimu1g02548 464 SMART cyclin_7 228 312 IPR013763 -
Vimu1g02548 464 SMART cyclin_7 325 413 IPR013763 -
Vimu1g02548 464 SMART Cyclin_C_2 321 444 IPR004367 -
Vimu1g02548 464 ProSitePatterns Cyclins signature. 223 254 IPR006671 -
Vimu1g02548 464 Gene3D - 207 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02548 Vimu-Chr1 36880822 36886292 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02548 12 450 Core Cell Cycle Gene Families AT5G25380 51.876 1.47e-138 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02548 K06627 - gmx:100777132 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02548 1 36880822 36886292 Vimu10g02888 10 40041441 40050212 PCT