Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02546 TTGCTTTGCGCCGCGACTCTTCCATTTTCAATTGATGGTTTTTTGTGCGTGATCGCGGGAATTAGGTTAGCTGATGTTCCTTTCTCGCTTTACAAGCAAAGCGACTATTACCAATGGAAGTGGCTGACTCTAGAGCATCCTGATTTTGGCTTGCGAGGAGGAGAATTTGTTTTCAGTCAAATTTTGATGGAGCGGCCTGGAAGCTTAAATGGCAGTCAGCATGTGATAGAAATAGGTGGGAGTTCCGATGCTTCTACTTCAACTGCGACACATCATGATAGCAATTATAATAGCACACACGTTACGCTACACGAAGAAAGAGTTACCGGTGCAAGGACGCCTCTATCTCAGCCTTCAGTTTCAGTCACTAGTTTATCAAATGGGTCTAATAGTCGGAATTCCTCGTTCATGAGACGCGGGGATACGCGTAGGAATAGGAGTCCGGTGCATTCGGGGTTGTGGATATCGATTGAGCTGGTCCTCTTAGTGAGCCAGATTGTTGCATCTATCGTTGTTTTATCTTTGTCAAGGCATGAACATCCTCGTACTCCATTGTTTCAATGGATCATTGGTTATGCTTCCGGATGTGTTGCTACCCTCCCTCTGCTTTATTGGCGGTATTATCATCATAACCATACGAGAGAGCAAGATTCATCTCAATCAAGGCAAACATCTCCTCGGATTAATGATCCTTCAGGGACACTCCTTTTCAGTTCGAGAACTAGTGGTGGAGAAGATGGTCAGGCTGTTGCATCCTCCAGAAGCAATCAAGCCTCTGTGTTGATGAATAGAAGAATGAAGACTCTAGTGGAATACTTCAAAATATCTTTAGATTGCTTTTTTGCTGTATGGTTTGTTGTTGGAAATGTATGGATCTTTGGGGGACATTCGTCTGCGGATGAAGCTCCTAACTTGTACAGGTTATGTATAGTGTTTCTTGCATTTAGCTGTATTGGTTATGCTATGCCCTTCATTCTCTGTTCAACAATCTGCTGTTGTCTCCCATGTATAATTTCCATCCTTGGGGTTAGAGAGGACATGTCACAAAACAGAGGGGCAACTTCTGAATCTATTAATGCTTTGCCAACTTACAAGTTCAAGATGAAGAAAAATAAAAGAAATGGAGAAGGAAACTCAACTGAAGGTGGAGTTGTGGCTGCAGGAACTGAGAAAGAGCGAGTAATATCTGGAGAAGATGCAATAAACAAGTGCCAACAAATCTACATGGGAGGACTGTACATATCCATCATCCCCCCTGCAAACATAGTTCAACAACTGACGACAGATGCTACGGCTTTACAAGGGACTTTGGATAGAGCTGTATATATCTCTGGAGAAGATGTGCAAAAACTGACGACAGATGCTACGGCTTTACAAGAGACTTTAGATAGGGCTGTATATATCACTGTAGAAGATGTGCAACAACTGCCAACAGATATTATGGCTTTACGAGAGACTTTAGATAGTTATGTTAGATTTGCTATGATAGCACTTGTATCTAATCAAACTTTCTATCTGGGCTATGGACGAACAGATTTAGGCTTGTGGCTTCTTGGTATGGTATGCTGCATCTGTCTGGCAAAGTATGAAAATAACGATGAGTTGAGAGAATTGCCTTGTTCTCATCTTTTCCACAAAGATTGTGTGGATAAATGGTTGAAGATAAATTCATTATGCCCTCTTTGCAAGAATGATGTTGGTGAGAACTTAACAGGAATGGTCTCAAGTGAAGATTCCAACCAACATCGGAGTGAGAGCAGGATTGAGAATGGCCTTGCGAATACATCACTTTAG 1794 0.4208 MLCAATLPFSIDGFLCVIAGIRLADVPFSLYKQSDYYQWKWLTLEHPDFGLRGGEFVFSQILMERPGSLNGSQHVIEIGGSSDASTSTATHHDSNYNSTHVTLHEERVTGARTPLSQPSVSVTSLSNGSNSRNSSFMRRGDTRRNRSPVHSGLWISIELVLLVSQIVASIVVLSLSRHEHPRTPLFQWIIGYASGCVATLPLLYWRYYHHNHTREQDSSQSRQTSPRINDPSGTLLFSSRTSGGEDGQAVASSRSNQASVLMNRRMKTLVEYFKISLDCFFAVWFVVGNVWIFGGHSSADEAPNLYRLCIVFLAFSCIGYAMPFILCSTICCCLPCIISILGVREDMSQNRGATSESINALPTYKFKMKKNKRNGEGNSTEGGVVAAGTEKERVISGEDAINKCQQIYMGGLYISIIPPANIVQQLTTDATALQGTLDRAVYISGEDVQKLTTDATALQETLDRAVYITVEDVQQLPTDIMALRETLDSYVRFAMIALVSNQTFYLGYGRTDLGLWLLGMVCCICLAKYENNDELRELPCSHLFHKDCVDKWLKINSLCPLCKNDVGENLTGMVSSEDSNQHRSESRIENGLANTSL 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02546 597 SMART ringv_2 521 563 IPR011016 GO:0008270
Vimu1g02546 597 SUPERFAMILY RING/U-box 521 569 - -
Vimu1g02546 597 CDD RING-H2_EL5-like 522 562 - -
Vimu1g02546 597 SMART ring_2 522 562 IPR001841 -
Vimu1g02546 597 MobiDBLite consensus disorder prediction 574 597 - -
Vimu1g02546 597 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 519 570 IPR013083 -
Vimu1g02546 597 Pfam Ring finger domain 522 563 IPR001841 -
Vimu1g02546 597 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 63 566 - -
Vimu1g02546 597 ProSiteProfiles Zinc finger RING-type profile. 522 563 IPR001841 -
Vimu1g02546 597 MobiDBLite consensus disorder prediction 115 136 - -
Vimu1g02546 597 MobiDBLite consensus disorder prediction 115 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02546 Vimu-Chr1 36861900 36870597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02546 522 569 C3H Transcription Factor Family AT1G80400 70.833 5.49e-20 90.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02546 - - gmx:100778728 590.112