Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02541 AAAGACAAGGAAATTGTTGGCAAAGAGGGTAAAGATATTGAAATGGAAGAAGGCACTCATGAGAAGAAGGAAGAAACCCTACCACCTGGTTTTCGCTTTCACCCCACAGATGAAGAACTCATTTGTTACTATCTCACAAACAAAATTTCAGATTCTGATTTTACAGCAAAAGCAATAGCTGTTGTAGATCTCAACAAATGTGAGCCATGGGATCTTCCTGGTGTGAGAACAAACAGAGCAACGAACACAGGGTACTGGAAAACCACTGGAAAAGACAAAGAGATCTTGAACAGTGTTACATCGGAGTTGGTCGGTATGAAGAAGACTTTGGTTTTCTACAAAGGTAGGGCTCCCAGAGGAGAGAAAACCAACTGGGTCATGCATGAATATCGCATTCATTCAAAATCCACCTTCAAAATCACTAAGAGTGGTGGTGCAAAAAAGTTCCCCTCTAATTCGAACCACAGCAGAACACTGAACCCTTATGGTGTTGAAGTTAGCCCTAGCGTTGTGCCATCCCAAATGATGCATCTGGCTGACCCTTCTGCTCATTTCAATTTCCTTTATGGATCAAGAAACTACATGCTCAACCCTTCAGAGTTCAGAGCTGCTGGATCCACAAGTGTCAATGTGACCAACCTCCCCCATTTCAACAATCCACCACCACCACCACCACCAGGAGGAGGAGGAGGAGGGTTCAGCATTTCTGGCCTTAATTTGAACCTGGGAGGAGCAGCAGTTTCCACTGCTGCCACCACACAAACACAGCCACTTCTGAAGCCAATGATAGCACCACCACAGCCACTTTCTGCTCACACAGTGGCCCAAATGAATCATGATTTCAGTTCCAACATAGTGACACCTGCTGCTGCTCTTGCTGCTGACAGTGTAGTCTATGGTGCAGACATGACTAATGCAAATTCTCATGGCAAT 933 0.4502 KDKEIVGKEGKDIEMEEGTHEKKEETLPPGFRFHPTDEELICYYLTNKISDSDFTAKAIAVVDLNKCEPWDLPGVRTNRATNTGYWKTTGKDKEILNSVTSELVGMKKTLVFYKGRAPRGEKTNWVMHEYRIHSKSTFKITKSGGAKKFPSNSNHSRTLNPYGVEVSPSVVPSQMMHLADPSAHFNFLYGSRNYMLNPSEFRAAGSTSVNVTNLPHFNNPPPPPPPGGGGGGFSISGLNLNLGGAAVSTAATTQTQPLLKPMIAPPQPLSAHTVAQMNHDFSSNIVTPAAALAADSVVYGADMTNANSHGN 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02541 311 ProSiteProfiles NAC domain profile. 27 161 IPR003441 GO:0003677|GO:0006355
Vimu1g02541 311 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 24 74 - -
Vimu1g02541 311 MobiDBLite consensus disorder prediction 1 30 - -
Vimu1g02541 311 Pfam No apical meristem (NAM) protein 28 75 IPR003441 GO:0003677|GO:0006355
Vimu1g02541 311 Pfam No apical meristem (NAM) protein 74 132 IPR003441 GO:0003677|GO:0006355
Vimu1g02541 311 Gene3D NAC domain 36 74 IPR036093 GO:0003677|GO:0006355
Vimu1g02541 311 Gene3D NAC domain 75 156 IPR036093 GO:0003677|GO:0006355
Vimu1g02541 311 SUPERFAMILY NAC domain 22 137 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02541 Vimu-Chr1 36772059 36774963 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02541 15 247 NAC Transcription Factor Family AT2G24430 45.608 1.44e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vimu1g02541 NAM 5.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02541 - - pvu:PHAVU_001G059900g 413.305