Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02539 ATGAGAAGCCAGAAAACAGAAGAAGAAAGGATTGAAAGAATAATTCGAAGTCTTTTAAAACTTCCCGAAAATAAAAGATGCATCAACTGCAATCTTTTGGGACCACAATATGTATGCACGACTTTCTCCACATTTGTATGCACAAATTGCAGTGGGATACATCGAGAGTTTACTCACAGAGTAAAATCTGTCTCAATGGCTAAATTTAGTCCAGAAGAAGTCTCTGCTCTTCAAGCTGGTGGAAATGAGAGAGCAAATCAGATTTATCTTAAAGAATGGGATCCTCTTCGCAATTCTAAGCCAGATCCCAGGTTCTGCATCTTTTACACAATGGAATTTACTAATAATATACAGAAACTCCGAGAATTCATCAAGTATGTGTATGTGGAAAGAAGATACACTGGAGAAAGTGGCAGTAGCAATCTTTCTAGAATTAGATTGAGTGAGAAGGAGCCTAATGCAAGTAAGAGAAGCAGTTCATTTCGTTTAGAGTTCAGAACTCCACATTCAAGTCCCGGTCCTTATCCAAAGAGTGATGACAAAAATTTGAGATATTTATATGATGAAAGCAGAAGTCCTAGATATGTTCAAAAGTATTCAAGGAATGGTGGCCATATCAGAAGTCCTATACAAATTGAAGTTGTTGATGACAGGTACAAAGATGATGAACGTAGAAATAGAAGACTTGCAAATATAGAAGCAAAGCTAAAGAAAACTTCAAGTGATGATATGAAGAAAGTGGAAATTGTTGCAGCTCCTTTGCCTGAAGTATCAAAGGAGAAAGCTCAACCCCTACAAATCAAACCTCCTGGTGGCAAGGGTTCTGTTGAGGAACAACCATCTAAGCAAAAAAATAATAATAATCCAGAAACACCACCACCACCACCTATAGCACAACAATCAAATGAAAATAACTGGGCCATATTTGATGCCTCAGCAGAGGACAATGTTCCTAAAACTCCACCAAACACAAGTACCTCTAATCCTTCCACAGGAAAGGCACCATCAGCAAAAAATCCTATAGACCTTTTACTTTCTGAATTGTCAGGTCCTATGACTCCAGTGACTGGTGGCATGTCACCTGTTCCAAGCAGTGCCAATAATGATCCAACAGCTACAACAGTACAAAATGCTATTGATTGGAACTTTCCACCTACTTCAGCAGGGAAAACAACTGCATCATCCAACAATACCAACAATACTAGTGTTTGGCCATCCACATCAACCCCAGCCACTGAACCAGCACAACCTTCTAATGAAGTTCCTCCACATACTGAAGTTTCACATCAACATAATCCATCAAGCATGCAGTATCTTCCATCTGCATCAGTAGCTTTTAGTTCAACTGCACAACCAACAAATTCAACAGTCACAGATCCATCAGTAACTCCAAGTGAAAAAGATCCTTCATGGTCTTTTACCGAACTACCTTCTCAAACTACCTCAAAACCCACTCAAGAAACCAAATCTGATGTTGGCTTGCAGCCTAGTAAAGTGGAAACTAAGGCTAGTGGAAGACAAGAATTTCCAGAGAACCTTTTCACACCAAGCTATTTATCTAGGCCAGCACCTCTTCCAAATTGGCAGAATGTTCAACCTTCTGGCATGGGATATGGCTTGCAGTATTATCATAATGCTGTGCCTCCCTCAGCCCTTTCAAATTCACCAATGTCCATAAATCCCTTTGAATTAACTGATGTGAGAAATATAACCCATGTTTCATCGCTTCCTTCTATGGCTTCTGTGGCTGGTGCACCGCAAGCTCTATCATCTCCCAGAACAGCATTGATGCATACTGCAAGCCTGGGGTCTTTGGTGTCTCAGTCTCCAAGTTATACATCCCCAGTTATGGGTATGTACTTTGATCAAGTTGATAACAAGGAGCAACCCACTAGACCTCAAAGAGTTGAGAGCTTCAATGGTGACATAACTTCTTTTGGATCTATAGACCCCCTTCAACATTCAAATAGATCATTCCAGACCTGCAAAAGTTCAATTTCTATTTCCAATACAAGAGGAAACCCATTTGACTAG 2034 0.4002 MRSQKTEEERIERIIRSLLKLPENKRCINCNLLGPQYVCTTFSTFVCTNCSGIHREFTHRVKSVSMAKFSPEEVSALQAGGNERANQIYLKEWDPLRNSKPDPRFCIFYTMEFTNNIQKLREFIKYVYVERRYTGESGSSNLSRIRLSEKEPNASKRSSSFRLEFRTPHSSPGPYPKSDDKNLRYLYDESRSPRYVQKYSRNGGHIRSPIQIEVVDDRYKDDERRNRRLANIEAKLKKTSSDDMKKVEIVAAPLPEVSKEKAQPLQIKPPGGKGSVEEQPSKQKNNNNPETPPPPPIAQQSNENNWAIFDASAEDNVPKTPPNTSTSNPSTGKAPSAKNPIDLLLSELSGPMTPVTGGMSPVPSSANNDPTATTVQNAIDWNFPPTSAGKTTASSNNTNNTSVWPSTSTPATEPAQPSNEVPPHTEVSHQHNPSSMQYLPSASVAFSSTAQPTNSTVTDPSVTPSEKDPSWSFTELPSQTTSKPTQETKSDVGLQPSKVETKASGRQEFPENLFTPSYLSRPAPLPNWQNVQPSGMGYGLQYYHNAVPPSALSNSPMSINPFELTDVRNITHVSSLPSMASVAGAPQALSSPRTALMHTASLGSLVSQSPSYTSPVMGMYFDQVDNKEQPTRPQRVESFNGDITSFGSIDPLQHSNRSFQTCKSSISISNTRGNPFD 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02539 677 FunFam Arf-GAP domain and FG repeat-containing protein 1 1 145 - -
Vimu1g02539 677 MobiDBLite consensus disorder prediction 138 182 - -
Vimu1g02539 677 SMART arf_gap_3 8 141 IPR001164 GO:0005096
Vimu1g02539 677 Pfam Putative GTPase activating protein for Arf 13 134 IPR001164 GO:0005096
Vimu1g02539 677 PRINTS HIV Rev interacting protein signature 43 60 IPR001164 GO:0005096
Vimu1g02539 677 PRINTS HIV Rev interacting protein signature 24 43 IPR001164 GO:0005096
Vimu1g02539 677 PRINTS HIV Rev interacting protein signature 61 82 IPR001164 GO:0005096
Vimu1g02539 677 SUPERFAMILY ArfGap/RecO-like zinc finger 11 134 IPR037278 -
Vimu1g02539 677 MobiDBLite consensus disorder prediction 258 507 - -
Vimu1g02539 677 PANTHER ARFGAP/RECO-RELATED 1 676 IPR044820 GO:0005096
Vimu1g02539 677 ProSiteProfiles ARF GTPase-activating proteins domain profile. 12 141 IPR001164 GO:0005096
Vimu1g02539 677 Gene3D Arf GTPase activating protein 1 144 IPR038508 -
Vimu1g02539 677 MobiDBLite consensus disorder prediction 358 507 - -
Vimu1g02539 677 MobiDBLite consensus disorder prediction 317 335 - -
Vimu1g02539 677 CDD ArfGap_AGFG 17 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02539 Vimu-Chr1 36752095 36756256 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02539 12 125 C2H2 Transcription Factor Family AT4G05330 37.288 5.30e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02539 - - vun:114194797 1078.93