Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02538 ATGAGGGTTTTCGTTGCAATTAATGTGACATTGGAGAGAGAAAACCTCTTAAATGAACCATCATTACACCAACAATGTAAAGTTCAGCATTTAAGAAGGGTGGAGTTATTCCTTCATTGGAGGTTGTTGAAGATAGCATTGCCTTCATTTAATGGTACAGTCAAATGTAAGTGTGTTCTTATGATGGATAACATTGGAAGTAATATGAGTGAAGTTGTGGAGTGTAGGGAAAGTACTGATGATTTTGGTTTAATTGAAGCGCCTGACTGTTATGTTACTTTGGATGACCCTAATAAAAGTCCTATGGACGTGGACCCAACAGAAGCCAAAAAATTCTACACGAACTATGCTATTAGATGTGGTTTTGCTGTGCGCACAAGAACATCAAAAAAGGATGACAACAATAATGTGAACTACCTCAGATTAGTGTGCTCTAGGGAAGGTAAATATGTTTCCTCAATCAACCCCGAAGTTAAAACACTTCCCAGCCAGACCAAACAATGTCCAGCTGGAATAACAATTTCAAAGAAGGACGACAAATGGTTTATAAGGACTGTGAACTTAGACCACAGCCATGACCTATGTCCAACTACTTCAAAGTTAATCCCGGGAAATAGAAAATTGAGCATGCAGAGCAAACACACTTTGGAGGTGAATGACGAAGCTGGAGTGCGGATTAATAAGAGTTACCTTAGTATAATGACCGATGCAGGTGGATATGATAACATGGACTTTACGGAGCGAGATGCTAGGAACTACATTGGTAAACACAGAAGATCCTTATGTAAGGACGGTGATGGACAAGCATTGTTGCGACACTTTTCGGCAAAGAAAGATTTAAACAATGATTTCTATTACGAGATTGAGTTGGATGAAGGGAATAGAATTTGCTCTGTTTTCTGGGCGGATGCGAGAAGTAGAGCTGCTGCTGAAGAATTTGGGGATGTGTTGTGTTTCGACACAACTTATTTAACCAATAAGTATGATATGCCTTTTGCGCCTTTTGTTGGGATCAATCACCACGGTCACTCCATATTACTTGGGTGTGGATTGTTGTCGTACGAAGACACAAAGTCTTTTGTGTGGTTGTTCCAATCATGGTTGCGATGCATGGGTAATACGGCCCCAATAGGGATTATAACCGATCAGTGTAGGGCAATGGCAAATGCCATTGAAGTAGTTTTTCCCAATACCAGGCATCGTTGGTGTTTATGGCACATCATGAAAAAGTTGCCAGAAAAATTTAGCGCTTGTAAGGAATATAATAGTATCAAATCACATATTAAGAAGCTTGTGTATGATTGTGGTTGTCCATCAGATTTTGAAAGTGGTTGGGAAGCACTAGTAAGCAGACATGGATTACATAAGAATGAATGGTTATGCACAATGTATGACGACAGACACAAATGGGTTCCTTGTTATTTGAAGAAAGATTTTTGGGCTGGCATGTCAACCACTCAAAGAAGTGAGGGAATGAATGCCTTTTTTGATGGATTTATAAATTCAAGCACAACTCTTCATCAATTTGTTGTGCAATATGACAATGCCCTAAGAGTTAAAGCCCAAAAAGAAATTCAAGCTGATTTCTCATCCCTTAACACGACGGTTGGATGTGGCTCTCAGTCACCAATAGAGAGAATATTTCAACAGGAGTACACACATTCAAAGTTTGAAGAAGTTCAAACCGAATTTAGGTCACGAATGAATTGTTTCATCAAAGACACTGTTAAGGATAACATGTCAAACACTTATACAATAAAAGAGGAGCGGCTATGGGATGGCAAAAGTGCAGACCAATATCATAAAGTACAATTTGATCCGATAACCAAAGATATCACCTGTTCCTGTTTACTCTTTGAGTTTCGGGGTATAATATGTCGGCACTCCCTTTTGGTTCTTGGACAGGAAGATGTTTGTAGTGTGCCCTCAAAATACGTTCTTCGTAGGTGGAGCAAGAATATCCGTAGAAGACACACTTTGGTTAGAGCAGCGTATATTAACTCCAGTCTTCAACCTACCATGCAAAGATACCAAAGTTTGTGCAAAACATTCTATGAAATTGCTGAGGTAGCGTGTGAGTCAGAACTTGTTTCCACGGAGTTGGAGAAAGAACTTGATATCTTGCGTAAAAAGTTTGGCTGCAGTTCTACGATGACAACTAACATAGTCAGTGAAGGAGGCGAACTGCGTTACGACAATGTTGTCCCTACTTCCATACAACAAAGCAGTGGTGAAAGTGGTGATTTACTTGTACGTAGTCCCAAAGCCGTCAAACGGAAGGGGAGACCTCGCACCAACAGGTTAAAGTCAGCCGTTGAGAAACGGAACAAAAAAGGAAAAAGTGTGTCAACGAAAAAGACTTCAAGAACATCCATTGCACAATGCGAACCTACATTCCCAAACCTAACACAATGTGATGAAGACATACAATTTGGATCCCAATCTTATCCATCCTACGATGTATCCCAACAATCCGACATACCGCAATCTGGATTTATGTCATTGTTAAATGCGGTACACAACAACTATGATGACAAAATTGTATGA 2547 0.3985 MRVFVAINVTLERENLLNEPSLHQQCKVQHLRRVELFLHWRLLKIALPSFNGTVKCKCVLMMDNIGSNMSEVVECRESTDDFGLIEAPDCYVTLDDPNKSPMDVDPTEAKKFYTNYAIRCGFAVRTRTSKKDDNNNVNYLRLVCSREGKYVSSINPEVKTLPSQTKQCPAGITISKKDDKWFIRTVNLDHSHDLCPTTSKLIPGNRKLSMQSKHTLEVNDEAGVRINKSYLSIMTDAGGYDNMDFTERDARNYIGKHRRSLCKDGDGQALLRHFSAKKDLNNDFYYEIELDEGNRICSVFWADARSRAAAEEFGDVLCFDTTYLTNKYDMPFAPFVGINHHGHSILLGCGLLSYEDTKSFVWLFQSWLRCMGNTAPIGIITDQCRAMANAIEVVFPNTRHRWCLWHIMKKLPEKFSACKEYNSIKSHIKKLVYDCGCPSDFESGWEALVSRHGLHKNEWLCTMYDDRHKWVPCYLKKDFWAGMSTTQRSEGMNAFFDGFINSSTTLHQFVVQYDNALRVKAQKEIQADFSSLNTTVGCGSQSPIERIFQQEYTHSKFEEVQTEFRSRMNCFIKDTVKDNMSNTYTIKEERLWDGKSADQYHKVQFDPITKDITCSCLLFEFRGIICRHSLLVLGQEDVCSVPSKYVLRRWSKNIRRRHTLVRAAYINSSLQPTMQRYQSLCKTFYEIAEVACESELVSTELEKELDILRKKFGCSSTMTTNIVSEGGELRYDNVVPTSIQQSSGESGDLLVRSPKAVKRKGRPRTNRLKSAVEKRNKKGKSVSTKKTSRTSIAQCEPTFPNLTQCDEDIQFGSQSYPSYDVSQQSDIPQSGFMSLLNAVHNNYDDKIV 848
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02538 848 SMART 26again6 612 639 IPR006564 GO:0008270
Vimu1g02538 848 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 105 710 IPR031052 GO:0006355
Vimu1g02538 848 Pfam FAR1 DNA-binding domain 111 195 IPR004330 -
Vimu1g02538 848 Pfam MULE transposase domain 316 410 IPR018289 -
Vimu1g02538 848 ProSiteProfiles Zinc finger SWIM-type profile. 601 637 IPR007527 GO:0008270
Vimu1g02538 848 MobiDBLite consensus disorder prediction 740 791 - -
Vimu1g02538 848 Pfam SWIM zinc finger 609 633 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02538 Vimu-Chr1 36733111 36736150 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Vimu1g02538 MULE 6.8e-34 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02538 - - vra:106778928 1203.73