Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02500 ATGTTCTCCAGCTCTCAATTCGATGTCACAACCGGCTTCTCCGGCGGCGGATTCATGTCCTCTCAGCCGTCTAACTTCAACGATTCCTCTCCCGCACCGACAAAAAGTCGTGAAACTCAGGGTTTGGTGCCGGTGACGGTGAAGCAGATTAGTGAAGCCTCTCAAACCGGTGACGAAAAATCGAATTTCGTGATCAACGGTGTAGATCTGAACAATATAACACTAGTGGGGATGGCGTTTGAGAAAGTTGAGAGAAACACCGATGTCAATTTTGTTTTGGACGATGGAACTGGACGAATAAAATGCCGAAGATGGGTTAATGAGACTTTTGACACGAAGGAAATGGAGGAAGTAATGAATGGTATGTACGTCCGTGTTTTTGGGCATTTGAAAAGCTTCCAAGGCGTTAGGCAACTTGTTGCTTTCTCTGTCAGGCATATATCCCACGAATTCAGCAAATTTGAGAATCGTCTATATAATCCAGTCATTGGACCATTAGAAGCTTTGACTGTTAACATTCCCAGCTACGTGCCTTGTCAATCGGAAGGAATCACTTCTACAAATCCTTCATCTGTCTCATCTTTGAACACTCCTGTCAAAAATGCCCCAATTGGATCTCAGCCGCCCACATCGACTCCAGCATATGCACAGTATAGCGTTGATGGACTTAAGGATTGCGATAAATTGATTATTGACTACCTGCAGCAGCATTCAGATATGTCAGATGAACGGGGAATACATGTCAATGAATTATCCCGGGAGCTCAAGCTTCCAATGGATAGGATCATGTTGTCGCTGAAGACTCTTGGAGACGATGGTTTAGTATACTCTACCATTGATGACTACCATTACAAACAAGCTTGA 864 0.441 MFSSSQFDVTTGFSGGGFMSSQPSNFNDSSPAPTKSRETQGLVPVTVKQISEASQTGDEKSNFVINGVDLNNITLVGMAFEKVERNTDVNFVLDDGTGRIKCRRWVNETFDTKEMEEVMNGMYVRVFGHLKSFQGVRQLVAFSVRHISHEFSKFENRLYNPVIGPLEALTVNIPSYVPCQSEGITSTNPSSVSSLNTPVKNAPIGSQPPTSTPAYAQYSVDGLKDCDKLIIDYLQQHSDMSDERGIHVNELSRELKLPMDRIMLSLKTLGDDGLVYSTIDDYHYKQA 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02500 287 Pfam Replication protein A C terminal 198 281 IPR014892 -
Vimu1g02500 287 PANTHER REPLICATION PROTEIN A-RELATED 6 285 IPR040260 -
Vimu1g02500 287 MobiDBLite consensus disorder prediction 14 43 - -
Vimu1g02500 287 FunFam replication protein A 32 kDa subunit A-like 35 163 - -
Vimu1g02500 287 Gene3D - 38 155 IPR012340 -
Vimu1g02500 287 PIRSF RPA32 175 287 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vimu1g02500 287 PIRSF RPA32 1 151 IPR014646 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Vimu1g02500 287 FunFam Replication protein A 32 kDa subunit 218 287 - -
Vimu1g02500 287 SUPERFAMILY "Winged helix" DNA-binding domain 221 285 IPR036390 -
Vimu1g02500 287 CDD RPA2_DBD_D 72 152 - -
Vimu1g02500 287 Gene3D - 217 287 IPR036388 -
Vimu1g02500 287 Pfam OB-fold nucleic acid binding domain 84 144 IPR004365 GO:0003676
Vimu1g02500 287 SUPERFAMILY Nucleic acid-binding proteins 42 148 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02500 Vimu-Chr1 36321214 36325165 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02500 1 287 Core DNA Replication Machinery Family AT2G24490 43.581 1.26e-78 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02500 K10739 - gmx:100802512 408.683
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02500 1 36321214 36325165 Vimu1g02500 1 36321214 36325165 ECH