Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02496 ATGCCAGGGTTAACGTGCAACGCTTGCAACACGGAATTCAACGATGACACAGAGCAAAAGCTCCATTACAAGTCCGAGTGGCACCGTTACAATCTCAAACGCAAGGTGGCTGGTGTTCCTGGGGTGACAGAAGCATTATTTCTGGCTAGGCAATCTGTGATTGCTCAAGAGAAGAATAAAGTGAGTGAGACCCCCATGCTGTATACCTGCGGTCTTTGTGGAAAGGATTATAAAAGTTCTAAAGCTCATGCTGAGCACCTTAAATCACGTGGTCATATGATGCGGGCTTCTGAAGGAACTAGTGATGCAGATGAGAAGGCAATAATTAAGCCACTTCCACAACGTGTTGTGAATAGACCTCCTCCTAGAAGAGATGTAGATAACTCTGAAAATGAAGAAAGTGAAGATGAATGGGAGGAGGTTGACCCTGAAGATGATTTGGTTGATGGGGCTGCAAAGTCCTTGACCGGTTTGAATGTGAATGAGCAAGGTGAAAATGCTGATATGGACGAAGATGAAGATGACAATGATGAGGATGACTTTGAGTTAGACCCCTCATGTTGCTTTATGTGTGATCAAAAGCACAAAACAATCGAAGACTGCATGGTTCACATGCACAAGCATCACGGATTCTTCATTCCAGATGTTGAGTATTTGAAGGATCCAAAAGGCCTCCTCACATATCTTGGCCTTAAGGTCAAAAGGGACTACGAGTGTCTGTACTGCAATGATCGATGTTATCCTTTCAGCAGCTTAGAAGCAGTCAGGAAACATATGGCAGCAAAAAGCCATTGTAAAGTGCATTTTGGTGATGGCGATGATGAGGAGGAGGTAGAGTTAGAAGAGTTCTATGACTACAGCAGTAGTTATGTGGATGATCAGGGCAAGCAGCTCATTGTATCTGGTGAAACAGATAACAATGTAGAACTTGTTGGTGGGTCCGAGCTCGTAATCACCAGGAAATCTGGTGATAGAATATCAACCAGAACTCTTGGTTCTCGTGAATTTTTGCGTTACTATCGTCAGAAACCCCGACCATCGCCAGCAAATAGTATGGCCATTACTGCTGCATTGGCTTCAAGGTACAGGAGCATGGGTTTGACCACTGTCCAATCAAGGGAGCAAATTGTGAGGATGAAAGTGCTGAAGGAAATGAATAGGTCAGGTGTGGAGAATATGCGTACCAAGATAGCAATGAAGAGTAATGTTATCCGAAACCTGCCAAAGAATGTCCCATATTAG 1242 0.4396 MPGLTCNACNTEFNDDTEQKLHYKSEWHRYNLKRKVAGVPGVTEALFLARQSVIAQEKNKVSETPMLYTCGLCGKDYKSSKAHAEHLKSRGHMMRASEGTSDADEKAIIKPLPQRVVNRPPPRRDVDNSENEESEDEWEEVDPEDDLVDGAAKSLTGLNVNEQGENADMDEDEDDNDEDDFELDPSCCFMCDQKHKTIEDCMVHMHKHHGFFIPDVEYLKDPKGLLTYLGLKVKRDYECLYCNDRCYPFSSLEAVRKHMAAKSHCKVHFGDGDDEEEVELEEFYDYSSSYVDDQGKQLIVSGETDNNVELVGGSELVITRKSGDRISTRTLGSREFLRYYRQKPRPSPANSMAITAALASRYRSMGLTTVQSREQIVRMKVLKEMNRSGVENMRTKIAMKSNVIRNLPKNVPY 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02496 413 SUPERFAMILY beta-beta-alpha zinc fingers 3 36 IPR036236 -
Vimu1g02496 413 SMART c2h2final6 186 208 IPR013087 -
Vimu1g02496 413 SMART c2h2final6 237 264 IPR013087 -
Vimu1g02496 413 SMART c2h2final6 4 28 IPR013087 -
Vimu1g02496 413 SMART c2h2final6 68 92 IPR013087 -
Vimu1g02496 413 SMART ZnF_U1_5 1 35 IPR003604 GO:0003676|GO:0008270
Vimu1g02496 413 ProSitePatterns Zinc finger C2H2 type domain signature. 6 28 IPR013087 -
Vimu1g02496 413 PANTHER ZINC FINGER PROTEIN 622 2 412 IPR040025 -
Vimu1g02496 413 Pfam C2H2 type zinc-finger (2 copies) 188 289 IPR041661 -
Vimu1g02496 413 MobiDBLite consensus disorder prediction 130 146 - -
Vimu1g02496 413 MobiDBLite consensus disorder prediction 84 180 - -
Vimu1g02496 413 MobiDBLite consensus disorder prediction 84 109 - -
Vimu1g02496 413 SUPERFAMILY beta-beta-alpha zinc fingers 171 234 IPR036236 -
Vimu1g02496 413 MobiDBLite consensus disorder prediction 165 180 - -
Vimu1g02496 413 ProSitePatterns Zinc finger C2H2 type domain signature. 70 92 IPR013087 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02496 1 413 C2H2 Transcription Factor Family AT4G31420 67.146 0.0 544
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vimu1g02496 zf-C2H2_2 3e-25 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02496 K14816 - gmx:100796317 711.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02496 1 36252748 36255254 Vimu1g02496 1 36252748 36255254 ECH