Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02492 ATGGGCCAAGCCCAAACCCTTTTAGGGTTTCTCCTTTTTCCTTCCCATTTGGTGCAGTACAGGGGAAGTCCCTGGCGGCAGCAGCTTCTTCTACAGCAAACAATAACCCTCATACACCGTAGCCAACTGCTTCCCCAGAACTCGAACAATAATCCTCACACCGCAAGCCACCAAATCTTTTTTTTTCCTCTGAAAAACGAAACAGAAACGGAAAGAAAAAAGAAAGGAAACTTCAAGAATGGGCGGACGCCGGGATCCAAGAACAAACCGAAGCCGCCGATGATGATCACCAGGGAGAGCGCCAACACGCTCCACGCGCACATCCTTGACGAGGTAGGCAGCGGCTGCGACGTGTTCAACAGCGTCGCCAGTTACGTGTGGCGATAG 387 0.5168 MGQAQTLLGFLLFPSHLVQYRGSPWRQQLLLQQTITLIHRSQLLPQNSNNNPHTASHQIFFFPLKNETETERKKKGNFKNGRTPGSKNKPKPPMMITRESANTLHAHILDEVGSGCDVFNSVASYVWR 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02492 128 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 58 128 IPR014476 GO:0003680
Vimu1g02492 128 MobiDBLite consensus disorder prediction 66 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02492 Vimu-Chr1 36162285 36163646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02492 81 128 AT-hook Motif Nuclear Localized (AHL) Family AT2G35270 70.833 2.08e-17 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02492 - - egt:105953542 81.6481