Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02488 ATGGATGAGTGTTCTGGTAGAAGAGGTGTGGATGGGGTGGCAGTCCCTAGAAAGGGGATGACCCATGTTTTTAGAGATACTGCTAATACTAGAGAACGAACAGGTCAAGTTTGCAGCAAATTGGGTTGCAGTAGTAGAGCCAATATTCCCAAAGTTGCTCAAGTCAGATCTTCTGAAAAGGGTAAATCTGTGAGGCCTTTATTCCAGTCCTCTTCAACTAGCAAAGAAGAAATTGGAAGTTCTTCTAGATCTACTAGTAACCCAGCAAAACGAACTACAGAACCTCGGAAAATATTATCCTCTCAGTTTGAGGCAGATTCCCCTGAAAGTAGTAGTGTACAGGATGAACCAGAATCTCCAGAGCTCATCCCTTCATCAGAAGAAATTCAGAGAGGCCCTAAATCCAGGGGGGGAAGTTCAGAGTCTAGTAATGTGAGACTGATGGAAGTAGGAAGCTCCAGTTCAGTATCAAATACTAGATCTCAAAGGAATTTTAATCAAAGACCAGGATTGCGTGGACAAGAAATCAAAAGCCCTGGTCCAGTGATACATGCTGTTTCAAGCCGGTATGGATTGAGGAACATCAGATGCAACACTATATCTGATGTCATCCCATCTGGTTGTTCATCATCAGATTCAAGTCATAATAGAAGGAAGGATACAATAAAAAAGAGAGACGGTGAAGGGGAAAGTAGTTCCACTGTCAGAGGGAAGAATATCATTGGATCTTCACTGGAAGGACGGAATTCTGGCTCCAGAAATGGCATATCTATATCTGATTCAAGAAGAACAAGAAATACACTTTCTCACCGGAATACCAGTTTTGCACCAGTAAGAACTCAAAGATCACTTAGTGGTCATGCCAGGGGAAGGCTTTCTAGCCAAGGAAATGAAAACCCTTTGGCAACCAGTGAGTTCCCACATTCTGGTGATGTTAATCATCATGGCATTTCATGTGATTCACCAGGCAATAGCAGTGAAGACTTACCTCTGTCTCCTCCAGAAGAAGATGACATCACTGATTCTCTAAATGGGGACAGCTTTTGGCATTACAATATGTCTAGTATTGAAGGGGTAGTATTGGCCCTTGAGAGGATTGAACAAGGTGGAGAGCTAACCCGTGAGCAAATTCTTATGTTCGGGACAGACATCTACGAAAATGGATTAAACTTTTATGATCACCACAGAGACATGCGGTTGGATATTGATAACATGTCCTATGAGGAACTCTTAGCCCTGGAAGAGAGGATGGGAACTGTGAGCACAGCTTTATCGGAGGAAGCACTTGCAGAATCTCTTAAAAGAAGTATATATCAGTCTCCACCTACACATGACACACATGAGAATTGTAATGAGGATAAGGATGACATCAAATGCTGCATTTGCCAGGAGGAATATGTTACTGGAGATGAAGTTGGGGAGCTGCCATGCAAGCATAGGTTTCATGTGGATTGTATACAGGAGTGGATGGGGCTGAAGAACTGGTGCCCTATTTGTAAATTATCTGCTGCACTGTCTAATAATTCATCTTCACCTTATTGA 1542 0.4248 MDECSGRRGVDGVAVPRKGMTHVFRDTANTRERTGQVCSKLGCSSRANIPKVAQVRSSEKGKSVRPLFQSSSTSKEEIGSSSRSTSNPAKRTTEPRKILSSQFEADSPESSSVQDEPESPELIPSSEEIQRGPKSRGGSSESSNVRLMEVGSSSSVSNTRSQRNFNQRPGLRGQEIKSPGPVIHAVSSRYGLRNIRCNTISDVIPSGCSSSDSSHNRRKDTIKKRDGEGESSSTVRGKNIIGSSLEGRNSGSRNGISISDSRRTRNTLSHRNTSFAPVRTQRSLSGHARGRLSSQGNENPLATSEFPHSGDVNHHGISCDSPGNSSEDLPLSPPEEDDITDSLNGDSFWHYNMSSIEGVVLALERIEQGGELTREQILMFGTDIYENGLNFYDHHRDMRLDIDNMSYEELLALEERMGTVSTALSEEALAESLKRSIYQSPPTHDTHENCNEDKDDIKCCICQEEYVTGDEVGELPCKHRFHVDCIQEWMGLKNWCPICKLSAALSNNSSSPY 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02488 513 MobiDBLite consensus disorder prediction 1 37 - -
Vimu1g02488 513 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 63 503 IPR045191 GO:0061630
Vimu1g02488 513 MobiDBLite consensus disorder prediction 201 340 - -
Vimu1g02488 513 ProSiteProfiles Zinc finger RING-type profile. 459 500 IPR001841 -
Vimu1g02488 513 SMART ring_2 459 499 IPR001841 -
Vimu1g02488 513 MobiDBLite consensus disorder prediction 63 119 - -
Vimu1g02488 513 SUPERFAMILY RING/U-box 453 503 - -
Vimu1g02488 513 MobiDBLite consensus disorder prediction 213 232 - -
Vimu1g02488 513 MobiDBLite consensus disorder prediction 233 306 - -
Vimu1g02488 513 FunFam E3 ubiquitin-protein ligase arkadia 421 505 - -
Vimu1g02488 513 MobiDBLite consensus disorder prediction 132 171 - -
Vimu1g02488 513 Pfam Ring finger domain 458 500 IPR001841 -
Vimu1g02488 513 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 421 504 IPR013083 -
Vimu1g02488 513 MobiDBLite consensus disorder prediction 51 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02488 Vimu-Chr1 36121345 36128654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02488 353 503 C3H Transcription Factor Family AT2G15530 47.712 5.70e-39 149
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02488 - - vum:124824270 944.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02488 1 36121345 36128654 Vimu1g02488 1 36121345 36128654 ECH
Vimu1g02488 1 36121345 36128654 Vimu10g02836 10 39651954 39655962 PCT