Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02480 ATGGCTGTGGAACTAATGGGGTTCCCCAAAATCGATGATCAAAAGGCCATCCAAGAGGCTGCATCGGAAGGCCTCAAGGGCATGGAACACCTGATCCGAATCCTCTCTCACCAACCCTCTCACTTGAACACCGACCTCACCGACGTTACCGTCTCCAAGTTCAAGAAACTCATTTCCCTCCTCAACCGAACCGGCCACGCCCGTTTCAGACGTGCTCCGCTTCAGGTTAACCCCCCTGAACCGGTTCAAACCCCCGAGCCTCTTCAAACCCTCGCACCGGCTCACAATCCTCCCTCTGCACCGCTCCATCTTCCTCCCCCGCAAACCGCCAACCTCTCTCTGCCGGCGCTCTTCGCCTCGCCGGCGCCGGTTCACCATGCCTCGGGGAGCGTCACGCTCGACTTCACCAAGCCGCACAACGCGCTCCGGAACTCCAAGGCCAAGTCCGTGGAACTCGAGTTCTCCAAGGAGACCTTCAGCGTCTCCTCCAACTCCTCCTTCATGTCCTCCGCCATCACCGGCGACGGCAGCGTCTCCAACGGCAAGATCTTTCTCGCCCCGCCGCCTCCTCCTCCCGCGACCTCCGCCGGGAAACCGCCGGCGTTCAAGAAACGCTGCCTCGAACACCGCGAAAACTCCGACGACGTCTCCGGATCCGGCAAGTGCCACTGCGTCAAGCGAAGGTACACCGCGTCTAATCACGTGAGTGGGGTAAGGCAGCGTTTGGGAGTCAACGATTTGGGTAGTGGTGCAGTTAAATGCATTAATAGGAAAAATAGGGTGAAGAAGACCGTGAGAGTGCCGGCGATAAGTTCAAAGATCGCCGATATTCCGCCGGACGAGTATTCATGGAGGAAGTACGGTCAGAAACCGATCAAGGGCTCACCGTACCCTCGGGGGTATTACAAGTGCAGCACGGTGAGAGGGTGTCCTGCAAGGAAACACGTGGAGCGTGCACCAGACGATCCGGCGATGCTGATAGTGACGTACGAGGGGGAGCACAGGCACGCGGTTCAGGCCGCGATGCAGGAGAACGCAGCCGGAGTGGTGGGTTTGGTGTTCGAGTCAACGTAG 1074 0.5894 MAVELMGFPKIDDQKAIQEAASEGLKGMEHLIRILSHQPSHLNTDLTDVTVSKFKKLISLLNRTGHARFRRAPLQVNPPEPVQTPEPLQTLAPAHNPPSAPLHLPPPQTANLSLPALFASPAPVHHASGSVTLDFTKPHNALRNSKAKSVELEFSKETFSVSSNSSFMSSAITGDGSVSNGKIFLAPPPPPPATSAGKPPAFKKRCLEHRENSDDVSGSGKCHCVKRRYTASNHVSGVRQRLGVNDLGSGAVKCINRKNRVKKTVRVPAISSKIADIPPDEYSWRKYGQKPIKGSPYPRGYYKCSTVRGCPARKHVERAPDDPAMLIVTYEGEHRHAVQAAMQENAAGVVGLVFEST 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02480 357 FunFam WRKY transcription factor 65 262 339 - -
Vimu1g02480 357 Pfam WRKY DNA -binding domain 280 336 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g02480 357 Gene3D WRKY domain 267 339 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g02480 357 SMART WRKY_cls 278 338 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g02480 357 MobiDBLite consensus disorder prediction 75 98 - -
Vimu1g02480 357 ProSiteProfiles WRKY domain profile. 273 339 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vimu1g02480 357 MobiDBLite consensus disorder prediction 78 98 - -
Vimu1g02480 357 Pfam Plant zinc cluster domain 256 276 IPR018872 -
Vimu1g02480 357 SUPERFAMILY WRKY DNA-binding domain 276 338 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vimu1g02480 357 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 15 342 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02480 Vimu-Chr1 35942856 35944999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02480 1 356 WRKY Transcription Factor Family AT2G24570 55.703 5.80e-110 322
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vimu1g02480 WRKY 1e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02480 - - pvu:PHAVU_001G060200g 565.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02480 1 35942856 35944999 Vimu1g02480 1 35942856 35944999 ECH