Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02472 GTTCGTTCTGTAAAGATGTCTCGCGTGTATGTTGGTAACTTGGATTCACGAGTGACAGAGAGGGATCTTGAAGACGAATTCCGTGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCAAGAAGGCCACCTGGTTATGCTTTTATTGACTTTGATGATAGGAGAGATGCTCAGGATGCTATTCGTGAATTAGATGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCACAATTCTAGGGGTGGAGGTGGTGGCCGCGGTGGCCGTTCTGGTGGTTCTGATTTGAAATGTTACGAGTGTGGTGAACCTGGTCATTTTGCCCGGGAATGTCGCTTACGTGGTGGATCAGGAAGACGCCGAAGCCGCAGCCCACCCCGATTTCGTAGGAGCCCTAGTTATGGACGAAGGAGTTACAGTCCTCGTGGGCGATCTCCTAGACGCCGCAGCTTATCACCTCGTGGACGAAGCTACAGCAGGTCACCTCCCTATCGTGGAAGGGAGGAGGTTCCATATGCTAATGGGTAG 519 0.5106 VRSVKMSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGGRSGGSDLKCYECGEPGHFARECRLRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANG 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02472 172 FunFam Serine/arginine-rich splicing factor 7 7 74 - -
Vimu1g02472 172 SUPERFAMILY Retrovirus zinc finger-like domains 87 110 IPR036875 GO:0003676|GO:0008270
Vimu1g02472 172 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 7 162 - -
Vimu1g02472 172 FunFam Serine/arginine-rich splicing factor RSZ22A 91 151 - -
Vimu1g02472 172 Pfam Zinc knuckle 94 109 IPR001878 GO:0003676|GO:0008270
Vimu1g02472 172 Gene3D - 3 78 IPR012677 -
Vimu1g02472 172 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 7 78 IPR000504 GO:0003723
Vimu1g02472 172 MobiDBLite consensus disorder prediction 71 93 - -
Vimu1g02472 172 SMART c2hcfinal6 94 110 IPR001878 GO:0003676|GO:0008270
Vimu1g02472 172 Gene3D - 89 147 - -
Vimu1g02472 172 SMART rrm1_1 8 74 IPR000504 GO:0003723
Vimu1g02472 172 ProSiteProfiles Zinc finger CCHC-type profile. 94 109 IPR001878 GO:0003676|GO:0008270
Vimu1g02472 172 SUPERFAMILY RNA-binding domain, RBD 5 89 IPR035979 GO:0003676
Vimu1g02472 172 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 66 IPR000504 GO:0003723
Vimu1g02472 172 CDD RRM_SRSF3_like 8 76 - -
Vimu1g02472 172 MobiDBLite consensus disorder prediction 107 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02472 Vimu-Chr1 35838785 35841075 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02472 5 65 Eukaryotic Initiation Factors Gene Family AT2G36660 38.462 3.51e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02472 K12896 - gmx:100796961 231.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02472 1 35838785 35841075 Vimu1g02472 1 35838785 35841075 ECH