Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02470 ATGTGGCTACAGAAGAATAATTGCGACAAGAAGGATGGGGTGCATGGAATAGTGGCAGTGGCAATTGATTCAGACAAGGGGAGCCAGAATGCACTAAAATGGACCATTGATCATCTCCTCCCCAAAGGGTCAAATGTAGTTCTCATTCATGTCAAGACTAAGCCCTCTTCTCTTCATCCATCAGTTTCTCTTGGGAACCCTAGGGCAAATGGTATTGCTGAGCATGCACTTGTTTGCAAGGACCCTGATGAACACACCAAAGAAGTTTTCCATCCATACCGTGTATTCTGTGCACGGAAAGATATACACTGCAAGGACGTTGTAATAGAAGATGCAGACGTAGCCAAAGCTTTAATTGAATATGCTTCTCAATATGCAATTGAGCACTTAGTCATAGGCTCTTCAAACAAAGGTGGTTTTCTTAGAAGATTCAAGATAGCAGATATTCCAGGAACAGTCTCAAAAGGGGCACCAGATTTCTGCACAGTATATGTTGTTACTAAAGGGAAGATTCAATCCATGCGATCTGCTTCTCGTGCTGCTCCAACCTTTTCCCCTCTTCAAAACCAACTTTCTCAACACAGTGGCAGATTAGACCTACCAGAACCACGTGTAGTCAGAGATATTCGGTTTCTTTTAGGGCTTGAAAGGAGGTCTCTTGATGTACCACGCCGTATATCACATGATGATTCAGAGTCCTTCAGGTCACCATTCACTAGGAGAGGAGTGAATAATGACAGGTATGGGGATATTCCAGGGCCAGAGACTGACATAAGTTTTGTAAGCTCTAGAAGGAGTACAGATCGCGTATTCCCATTGTATAACAACAGCAACCACTACCTAGAGTCCAATCCCCGGCTATCATATAGCTCTGACACAGATGGAAATAATTATAGCTTTGAGTCAATACCTTTTGGAAGAAGGTCTATGGATATCTGCTCTGATTTCTCATCCTTCTCACAAGAGAGTGATGGCTTGTCATCCTCTGCATCACAGGGAATGGATGATGTGGAGGCTGAAATGAGAAGACTAAAATTGGAGCTCAAGCAAACAATGGAAATGTATAGCAATGCCTGCAAAGAAGCACTCACCGCACAGCAAAAGGCTGTGGAACTCCAACGCTGGAAATTAGAGGAAGAGAGGAGATTAGAGGAGGCAAGGCTTGCCGAAGAAGCTGCATTGGCGATTGCAGAAAAGGAGAAGGCAAGATCAAAAGCAGCTATCGAGACAGCTGAAGCACAGAAGAGGATTGCAGAACTGGAATCACAGAAGAGAATCAGTGCTGAAATGAAAGCATTGATGGAAACAGAAGAGAAAAGAAAAGCAGTGGATGCTTTATCAGGCACTGGTTTGAGGTATAGAAGGTACACGATTGAGGAGATTGAAGCTGCCACACATTTTTTTACTGAGTCACAGAAGATCGGAGAAGGGGGTTATGGTCCAGTTTATAAGTGCCTTCTGGACCATACACCTGTGGCAGTGAAGGTTCTGCGTCCTGACGCAGCACAAGGAAGGTCACAGTTTCAAAGAGAGGTTGAGGTACTGAGTTGCATTCGGCATCCAAACATGGTTCTCCTCATAGGTGCCTGCCCTGAGTATGGCTGCCTTGTGTATGAGTACATGGCCAATGGAAGCTTAGATGACTGCCTCTTCTGCCGAGGAAACAGACCCCCAATTCCATGGCAGCTCAGGTTCAAAATTGCAGCTGAAATTGGCACAGGCTTGTTGTTCCTCCATCAGACCAAACCTGAGCCTCTTGTGCACAGAGACCTTAAACCAGCCAACATCTTGCTGGACAGAAACTATGTGGCCAAGATCAGTGATGTAGGTTTGGCCAGGCTGGTTCCACCCTCAGTGGCAGACAATGTGACACAGTATAGGATGACATCGGCTGCTGGAACATTCTGTTACATAGACCCTGAGTATCAGCAGACAGGAATGCTGGGAGTGAAGTCTGACATATACTCTCTTGGGATCATTTTCTTGCAAATTTTGACAGCAAAACCTCCAATGGGTTTGACTCATAATGTTCAGAGAGCCATTGAGAAGGGAACATTTATTGATATGTTGGATCCAAAAGTGCCTGACTGGCCAACAGAGGATGCCTTGGTCTTTGCAAAGATTGCTGTCAGGTGTGCTGAACTGAGGAGGAGAGACAGGCCTGATCTTGGTAAGGAAGTGCTGCCTGAACTAGACAGGCTAAGAGAACTTGCTGAGAGCCATGATCACTATTCAATGTTTGGTGGCTATGCTAGCCCTTCCAATCAGAGCCAAGTTTCTCTGGTAAGGTTCTTTCTGTTCATGTTCCAATTATTAAGGATCTTTCCATGTGTTTTTATGGACTTTTTGTGA 2352 0.4494 MWLQKNNCDKKDGVHGIVAVAIDSDKGSQNALKWTIDHLLPKGSNVVLIHVKTKPSSLHPSVSLGNPRANGIAEHALVCKDPDEHTKEVFHPYRVFCARKDIHCKDVVIEDADVAKALIEYASQYAIEHLVIGSSNKGGFLRRFKIADIPGTVSKGAPDFCTVYVVTKGKIQSMRSASRAAPTFSPLQNQLSQHSGRLDLPEPRVVRDIRFLLGLERRSLDVPRRISHDDSESFRSPFTRRGVNNDRYGDIPGPETDISFVSSRRSTDRVFPLYNNSNHYLESNPRLSYSSDTDGNNYSFESIPFGRRSMDICSDFSSFSQESDGLSSSASQGMDDVEAEMRRLKLELKQTMEMYSNACKEALTAQQKAVELQRWKLEEERRLEEARLAEEAALAIAEKEKARSKAAIETAEAQKRIAELESQKRISAEMKALMETEEKRKAVDALSGTGLRYRRYTIEEIEAATHFFTESQKIGEGGYGPVYKCLLDHTPVAVKVLRPDAAQGRSQFQREVEVLSCIRHPNMVLLIGACPEYGCLVYEYMANGSLDDCLFCRGNRPPIPWQLRFKIAAEIGTGLLFLHQTKPEPLVHRDLKPANILLDRNYVAKISDVGLARLVPPSVADNVTQYRMTSAAGTFCYIDPEYQQTGMLGVKSDIYSLGIIFLQILTAKPPMGLTHNVQRAIEKGTFIDMLDPKVPDWPTEDALVFAKIAVRCAELRRRDRPDLGKEVLPELDRLRELAESHDHYSMFGGYASPSNQSQVSLVRFFLFMFQLLRIFPCVFMDFL 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02470 783 ProSiteProfiles Protein kinase domain profile. 468 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02470 783 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 144 - -
Vimu1g02470 783 SUPERFAMILY Protein kinase-like (PK-like) 451 723 IPR011009 -
Vimu1g02470 783 ProSitePatterns Serine/Threonine protein kinases active-site signature. 586 598 IPR008271 GO:0004672|GO:0006468
Vimu1g02470 783 Coils Coil 334 423 - -
Vimu1g02470 783 PANTHER OS02G0152300 PROTEIN 18 746 - -
Vimu1g02470 783 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 440 540 - -
Vimu1g02470 783 Gene3D HUPs 17 166 IPR014729 -
Vimu1g02470 783 Gene3D Phosphorylase Kinase; domain 1 449 540 - -
Vimu1g02470 783 MobiDBLite consensus disorder prediction 231 257 - -
Vimu1g02470 783 Gene3D Transferase(Phosphotransferase) domain 1 541 748 - -
Vimu1g02470 783 Pfam Universal stress protein family 18 144 IPR006016 -
Vimu1g02470 783 FunFam U-box domain-containing protein 51 541 741 - -
Vimu1g02470 783 SMART serkin_6 468 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02470 783 Pfam Protein kinase domain 468 701 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02470 783 CDD STK_N 17 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02470 Vimu-Chr1 35821724 35826819 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02470 1 761 Receptor kinase-like Gene Family AT1G78940 56.404 0.0 785
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vimu1g02470 Pkinase 5.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02470 - - gmx:100779981 1173.3