Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02459 ATGGACAGTGACCGGAGCGTGTCTGCTCCATCTCATGGGCAAGTTGACGGCACTCAGAGAGTTAAAGCATTACATGGGACTGATGTGCAATGCCTGCATAGGTGGCAAAAGGTTTTAAATCCTGAACTTGTTAAAGGTCCATGGTCTAAAGAGGAAGATGACATAATTATTGAATTGGTGAATAAAAATGGGGCTAAAAAGTGGTCATCTCTTGCACGACATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTATGGTTATTGGATTGTTGCTATCTTCCCCATTGAGTTGCACTTGACTAGTATGCTTGGCATGTATGGGCACCACAACCAATTATGGGCAAATGGTCTGCAGAATATTTGA 369 0.4282 MDSDRSVSAPSHGQVDGTQRVKALHGTDVQCLHRWQKVLNPELVKGPWSKEEDDIIIELVNKNGAKKWSSLARHLPGRIGKQCRERYGYWIVAIFPIELHLTSMLGMYGHHNQLWANGLQNI 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02459 122 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 98 IPR017930 -
Vimu1g02459 122 PANTHER MYB PROTEIN-RELATED 22 87 - -
Vimu1g02459 122 MobiDBLite consensus disorder prediction 1 15 - -
Vimu1g02459 122 SUPERFAMILY Homeodomain-like 27 90 IPR009057 -
Vimu1g02459 122 MobiDBLite consensus disorder prediction 1 20 - -
Vimu1g02459 122 ProSiteProfiles Myb-like domain profile. 40 91 IPR001005 -
Vimu1g02459 122 SMART sant 44 93 IPR001005 -
Vimu1g02459 122 FunFam Transcriptional activator Myb isoform A 44 91 - -
Vimu1g02459 122 Gene3D - 42 91 - -
Vimu1g02459 122 Pfam Myb-like DNA-binding domain 45 87 IPR001005 -
Vimu1g02459 122 CDD SANT 47 91 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02459 Vimu-Chr1 35642917 35645061 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02459 27 87 MYB Transcription Factor Family AT4G32730 81.967 1.07e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu1g02459 Myb_DNA-binding 5.3e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02459 - K09420 gmx:100794559 140.198