Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02458 ATGGCCTGCCATGCCATGGGTTGTGGATTTCATGACCCATTTTTGCTTTTAGAAAAGGAAGAGGAGTTGGCTCTAATACATTATCATCAGATATTTGGGAACAAATGGGCCGAGTTGTCAAAGTACATTCCTGGAAGGACAGACAATGCTATTAAAAATCACTGGAACAGCTCCGTCAAAAAGAAATTGGATTCTTATTTGACATCTGGTGTGCTTAATCAGTTTGAGCCTGTACTTCATGTTGGAAATTCAAATCAATCAACAAGGTTGCAGTGTAGTGGAGATGATAACTGTTCCAAAGGGATTGAAAGAGAAGAGGTTTCGGAGTCCAGCCAAGGTTCAGCTAATGCTGTTTGCTTTCCGTCTGCTAGAGGAACGAGCAATACTGAATTACAAAATAGAGAGGCGACTTGTAGGCCAAATGAAGAATGTAATCTTCGAAAGGATCATAGTCCAAGTCAAGCATCTTGTTCAGAGCCATATTATGCATTAATTGATGATCTTAGTATATGCATTCCTGAAATTTCTCACCAAGAGGCATGCACTTCTCAGTTCATTGAGCAACAATCACGTGAACTGGGAAATTCCATAACTGGGGATTGTCATATCAATTTACATTCCTTACCCAATGTTTCATCAATGGTCCTGGGGCAGGATTCCTCGCAGTTGCATAGAGATTGTGTAGCTTCTAGTGAAATCTGTGACATGGTGAATGTTCCAGTTCGGCCTTCAGAGGCATTGGATGCTTCAACTTCCATGGTGCCTGCATCTTTAGGTTCTCTTAAACCAGAGCATGTGTTGATATCTGATGATGAATGTTGCAGAGTTCTGTTTTCAGATTCAATAAATGATGGGTGTTTTCCTCCTGTAGATTATATTAAAGGTGAAGAAACAGTTAAATTTTCTGGATGTACTTCATTTCGTTGCCAATCTTGTAATTTCCAGATATCTGAAACTGGTGGATCCTCAACTCCTCAGCTAACTTGTCCTCGGTGTTCTAATAATTATCAAGGAACTTCGTCCTCCCTGTCAAATCCTCCAGTACTTTCTGAATGTGATGATAGGGAGGGGCCATCTGCCAATGACAATCATTTATATGGGGCAGACGGTCAGCAGTTGGTCTCCACAGCACCTGCTAACCTCACTTATGTCAATTACATATCCAGTTCTCCCTGTGTGGATGGTATGGGTACTGTAGTAATGGAAGAACCACGTGAGGAAAACACAAATGTGCATACAGAAAAGGAGGACTCAGGATCTCTATGTTATGAACCTCCCCGTTTTCCAAGTTTGGATATTCCTTTCTTCAGCTGTGATCTTGTACAATCTGGGAGTGATATGCAGCAAGAGTTTAGTCCCTTGGGAATCCGCCAGTTTATGATGTCTTCTATGAATTGTCTTACTCCTTTTAAGTTGTGGGACTCACCCTCTCATGGTGATAGTCCTGATGCATTGTTAAAAAGTGCAGCTAAAACTTTTACAGGTACACCATCCATATTAAAGAAACGGCACCGAGATTTGTTGTCACCACTCTCAGATAAAAGAGTTGAAAAGAAACTTGAGACTGACATGACTACCTTCACCAAAAACATTTGCAGTTTGGATGTCATGTTAGATGACAATGAGACTCAGGAAACGGATATCCCTTTATTGCAAAAACAGAACAGCAGTGCATGTGTTGATGATGATAATAAAGAAAATTGCGGACGAGCTTATAAGCCAACTGAGTATGGAATTTTCGATGAAAAGAACTCCCATAAAGATACTGTAGACAATTCTCAGCCTAATGCGAAGCAACAGCGGCTAAGGGTTGATGCCTCAGCTGCTGCCATTGAACAAGAACCTTCTGGAGTTTTGGTTGAACATGATGTGAATGACTTGACGCTGTCTCCTGATCAAGTTGGTTTAAAATCAAACAGAGGGGTTGGTACAAGTACAAAAACACCCAAAAGCATCATGAACAGAACCTTGGAAGAAGTTCCAAATCAGAATGGCCATTTGAAATTATCTTCTAAAAATCCATGCTCAAGGATTAATTCTAATTCTCCTTGTGTTCGAGCAAAGGAGCATGAAAAACTTTCTGTTGCTGTTACTCGTGTACAAGCTCCAGCGGACAATTCAGGGGAACAAACCAGAAAGGATGGTGGTTTTGAAACATGTAGCATATTTGGTGGAACACCTTTTAGGAAAGGCCTTGAATCACCTTCCGCATGGAAATCTCCTTGGTTCTTCAACGCTTTTCTATCTAGCCCCAGACTTGATACCGAACTTACAGCTGAGGATTTTGGGTATTTAATGAGCCCAGGTGATAGAAGCTATGATGCAATCGGGTTGTTAAAACAGATCAGTGAACATACTGCTGCTACATATGCCAATGCTCAAGAGATTTTGGTAAATGAAACTCCCAAGGCATTACAGAAAGATGCATCTGGAAACGACAAGGATAACTACCAAGGTTCTCCCAATCAGCCTGGGAACCATTCTCAATTGGCTTCAAATGCATTGATAGAGCGACGTACACTTGACTTTAGCGAATGTGGAACACCAAGCAAGGGTGATGACAACAAATCCTCAGCTATAAGTTCCAAAAGCCCTTCTTCGTATCTGTTGAAAGGTTGTAGATGA 2625 0.4114 MACHAMGCGFHDPFLLLEKEEELALIHYHQIFGNKWAELSKYIPGRTDNAIKNHWNSSVKKKLDSYLTSGVLNQFEPVLHVGNSNQSTRLQCSGDDNCSKGIEREEVSESSQGSANAVCFPSARGTSNTELQNREATCRPNEECNLRKDHSPSQASCSEPYYALIDDLSICIPEISHQEACTSQFIEQQSRELGNSITGDCHINLHSLPNVSSMVLGQDSSQLHRDCVASSEICDMVNVPVRPSEALDASTSMVPASLGSLKPEHVLISDDECCRVLFSDSINDGCFPPVDYIKGEETVKFSGCTSFRCQSCNFQISETGGSSTPQLTCPRCSNNYQGTSSSLSNPPVLSECDDREGPSANDNHLYGADGQQLVSTAPANLTYVNYISSSPCVDGMGTVVMEEPREENTNVHTEKEDSGSLCYEPPRFPSLDIPFFSCDLVQSGSDMQQEFSPLGIRQFMMSSMNCLTPFKLWDSPSHGDSPDALLKSAAKTFTGTPSILKKRHRDLLSPLSDKRVEKKLETDMTTFTKNICSLDVMLDDNETQETDIPLLQKQNSSACVDDDNKENCGRAYKPTEYGIFDEKNSHKDTVDNSQPNAKQQRLRVDASAAAIEQEPSGVLVEHDVNDLTLSPDQVGLKSNRGVGTSTKTPKSIMNRTLEEVPNQNGHLKLSSKNPCSRINSNSPCVRAKEHEKLSVAVTRVQAPADNSGEQTRKDGGFETCSIFGGTPFRKGLESPSAWKSPWFFNAFLSSPRLDTELTAEDFGYLMSPGDRSYDAIGLLKQISEHTAATYANAQEILVNETPKALQKDASGNDKDNYQGSPNQPGNHSQLASNALIERRTLDFSECGTPSKGDDNKSSAISSKSPSSYLLKGCR 874
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02458 874 SUPERFAMILY Homeodomain-like 19 64 IPR009057 -
Vimu1g02458 874 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 19 63 IPR017930 -
Vimu1g02458 874 MobiDBLite consensus disorder prediction 811 828 - -
Vimu1g02458 874 PANTHER MYB DOMAIN PROTEIN 55 20 209 - -
Vimu1g02458 874 Gene3D - 18 76 - -
Vimu1g02458 874 ProSiteProfiles Myb-like domain profile. 19 59 IPR001005 -
Vimu1g02458 874 MobiDBLite consensus disorder prediction 804 828 - -
Vimu1g02458 874 CDD SANT 26 56 IPR001005 -
Vimu1g02458 874 MobiDBLite consensus disorder prediction 842 874 - -
Vimu1g02458 874 SMART sant 13 61 IPR001005 -
Vimu1g02458 874 MobiDBLite consensus disorder prediction 850 868 - -
Vimu1g02458 874 Pfam Myb-like DNA-binding domain 19 56 IPR001005 -
Vimu1g02458 874 MobiDBLite consensus disorder prediction 338 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02458 Vimu-Chr1 35638147 35642779 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02458 19 874 MYB Transcription Factor Family AT4G32730 36.188 1.95e-135 427
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu1g02458 Myb_DNA-binding 3.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02458 - K09420 gmx:100794559 1219.91