Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02446 ATGAAGAAAAAGAAATCAGATGCAGAAAGGCAGCATGACGACTACAATGAATTTAAGAGCAATGAAGATAAAGATGATTGTCAATACAAAATGAAGGAGTGGAAGAAGGAAACACTGTGTGAAGAAGGAAAAAGTAAGGAGTATAATGAATTTGAAAGAAATGAAGGTGAAGATGATGCCCATAGTAAGAAGAGGAAGAAGAAAAAATGCAGTACAGAAAGCAAAAGTAAGGAGTATGAAGTCTTTGAAAAGAATGAAGGTGAAGTTGAAGCTGATGCCAAAGGTAAGGAGAGGAAGAAGAAAAAACTGAGGGAAGAAGACAAATGTAAGGAGTATGATGAGTTTGAAAACAATGAACGTGAAGATGATGCCCAAGGTAGGAAGAGAAAGAAGAAAAAGTTGAGTAAAGAAAGCAAAAGTAAGGAGTATAATGTCTTTGAGAGGAATGAAGGTGAAGATGATGTGAAAGATAAGAAGAAGAAGAACAACAACAAACTGAGTGAAGAAGCAAAAAGTAAGGAGTATAATGAATTTGACAGCAATGAAGTTGAAGACAATGCCCAAGGTAAGAAGAAAAAAATGAGTAAAAAAAGCAAAAATGAGGAGTATAAGGTCTTTGAAAGGAAGGGAGGTGAAAGCTATTCCGAAGGTAAGAAGAGGAAGAAGAAAAAATTGAGTACAGAAAGCAAAAGTAAGGAGTATGAAGTCTTTGAAATGAATGAAGGTGAGGGTGAAGGTGATGCCAAAGGTAAGGAGAGGAAGAAGAAAAAATTGAGGGAGGAAGGCAAAAGTAAGGAGTGTAATGAATTTGAAAACAATAATGGTGAAGATGATGCTCAAGGTAGGAAGGGGAAGAAGAAAAAGTTGAGTAAAGAAAGCAAGAGTGAGGAGTATAATGTCTTTGAAACGAATGATGGCGAAGATGATGCCAAAGGTAAGAAGAAGAGAAAAAAACATGGTGAAGAAAGCAAAAGTAAGGAATATAATGTGTTTGAAAATAATGAAGGTGAAGGTGATGCCCAAGGTAAGAAGAGGAAGAAGAAAAAATTGAGTAAAGAAAACAAAAGTACGGAGTATAATGTATTTCAAAGGAATGAAGGTGAAGACAATGTTGAAGGTAGGAAGAGTAAGAAGGAAAAAATGATTGAAGACAGCAAAAGCAAGGACAAAAATGTAATGACAAAGAAGAAAGCCAAGGCAGATAATGGTGACTCTTCTAATCCTGCACAGAGTGTATTATCCAAACCCAAACGGGTAACTTTTTCTGATCAAGTGGATGTTTGTTGTGATGGCTTAGTCCGTGGGAAACGGTTCACACCAGAAGAAGATGAGCAGGTTAAAGCGGCAGTTTATAATTTTATAGAGTCTCGTGGTTTGGGAGATGAAGGTGTAGATATGGTTCTCCATTGCCAGGCTCATCAGGAAATTAGATATTGTTGGAAGGAAATTGCAGCAGCCTTACCCCACAGGCCAGTGTATAGTGTGTATTGTCGTGCCCATATTTTGTTTGAAGCGGATGAGAAAAGGTGGACACGTGAAGAGTATGAATTTTTACGGAAGGTCAAGGAAGAATATGGATATAATTGGAGACAAGTAGCTGACGCATTGGGCAAAAGTCGACTTCAAGTGAAGGATGCATGGCGTAGAGTGAAATTAAATACAAATAAAGGACGATGGACCCAAGAGGAGTATCAAAAGTTATTTGATTTAGTGAACGAGGACCTACGCGTGAGGGCTTCACAGGGTTATAGAAAATCAAAACATGGTATGTTGCGAGATAATATTGGTTGGGAGGCAATTGCTACAAAGTTGGCCACTAGAAACTCCGGGAGCTGCTGCCACAAGTGGTATGATAATTTAAGATCTCCCATGGTTGCTGCTGGTGCCTGGAGTGATACTGATGACTATCGCCTGGTCGATGCTTTATATAATTTGGATGCGTGCTGCATGGAGGAGGTGGATTGGGACAATCTGCTTGAGCATAGGACTGGTGAGGCATGTAGAAAACGGTGGAACCAAATTGTCCGATATATTGGGGAGCATGGGGGGAAGCCATTTGCTGAGCAGGTTGAAATTCTTGCAAAAAGATATTGCCCCAACTTATTGCAAGAAAGAGAGGCCTTTGATGCAAAACCTTTGGTTTGTTGA 2148 0.3906 MKKKKSDAERQHDDYNEFKSNEDKDDCQYKMKEWKKETLCEEGKSKEYNEFERNEGEDDAHSKKRKKKKCSTESKSKEYEVFEKNEGEVEADAKGKERKKKKLREEDKCKEYDEFENNEREDDAQGRKRKKKKLSKESKSKEYNVFERNEGEDDVKDKKKKNNNKLSEEAKSKEYNEFDSNEVEDNAQGKKKKMSKKSKNEEYKVFERKGGESYSEGKKRKKKKLSTESKSKEYEVFEMNEGEGEGDAKGKERKKKKLREEGKSKECNEFENNNGEDDAQGRKGKKKKLSKESKSEEYNVFETNDGEDDAKGKKKRKKHGEESKSKEYNVFENNEGEGDAQGKKRKKKKLSKENKSTEYNVFQRNEGEDNVEGRKSKKEKMIEDSKSKDKNVMTKKKAKADNGDSSNPAQSVLSKPKRVTFSDQVDVCCDGLVRGKRFTPEEDEQVKAAVYNFIESRGLGDEGVDMVLHCQAHQEIRYCWKEIAAALPHRPVYSVYCRAHILFEADEKRWTREEYEFLRKVKEEYGYNWRQVADALGKSRLQVKDAWRRVKLNTNKGRWTQEEYQKLFDLVNEDLRVRASQGYRKSKHGMLRDNIGWEAIATKLATRNSGSCCHKWYDNLRSPMVAAGAWSDTDDYRLVDALYNLDACCMEEVDWDNLLEHRTGEACRKRWNQIVRYIGEHGGKPFAEQVEILAKRYCPNLLQEREAFDAKPLVC 715
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02446 715 Pfam Myb-like DNA-binding domain 510 567 - -
Vimu1g02446 715 SMART sant 555 622 IPR001005 -
Vimu1g02446 715 SMART sant 626 677 IPR001005 -
Vimu1g02446 715 SMART sant 506 553 IPR001005 -
Vimu1g02446 715 SMART sant 434 505 IPR001005 -
Vimu1g02446 715 ProSiteProfiles Myb-like domain profile. 551 620 IPR001005 -
Vimu1g02446 715 MobiDBLite consensus disorder prediction 365 402 - -
Vimu1g02446 715 SUPERFAMILY Homeodomain-like 508 550 IPR009057 -
Vimu1g02446 715 Coils Coil 156 176 - -
Vimu1g02446 715 ProSiteProfiles Myb-like domain profile. 622 675 IPR001005 -
Vimu1g02446 715 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 509 556 IPR017930 -
Vimu1g02446 715 ProSiteProfiles Myb-like domain profile. 509 550 IPR001005 -
Vimu1g02446 715 Gene3D - 551 625 - -
Vimu1g02446 715 MobiDBLite consensus disorder prediction 47 416 - -
Vimu1g02446 715 MobiDBLite consensus disorder prediction 47 64 - -
Vimu1g02446 715 MobiDBLite consensus disorder prediction 72 128 - -
Vimu1g02446 715 Gene3D - 511 550 - -
Vimu1g02446 715 PANTHER GB|AAC33480.1 149 714 - -
Vimu1g02446 715 Coils Coil 86 106 - -
Vimu1g02446 715 CDD SANT 509 551 IPR001005 -
Vimu1g02446 715 SUPERFAMILY Homeodomain-like 600 678 IPR009057 -
Vimu1g02446 715 CDD SANT 558 620 IPR001005 -
Vimu1g02446 715 MobiDBLite consensus disorder prediction 1 23 - -
Vimu1g02446 715 MobiDBLite consensus disorder prediction 137 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02446 Vimu-Chr1 35450836 35452983 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02446 510 641 MYB Transcription Factor Family AT4G00540 27.857 7.77e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02446 - - var:108338141 1139.41