Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02444 ATGCAGATGATGAAGAAGAAGAAATCAGATGCAGAAAGGCAGCATGACGACTACAATGAATTTAAGAGCAATGAAGATAAAGATGACAATCAGTACAAAATGAAGGACTGGAAGAAGAAAACACTGAGTGAAGAAGGAAAAAGTAAGGAGTATAATGAATTTGAAAGAAATGAAGGTGAAGATGATGCCCATAGTAAGAAGAGGAAGAAGAAAAAATGGAGTACAGAAAGCAAAAGTAAGGAGTATGAAGTCTTTGAAAAGAATGAAGGTGAAGTTGAAGCTGATGCCAAAGGTAAGGAGAGGAAGAAGAAAAAACTGAGGGAAGAAGACAAATGTAAGGAGTATGATGAGTTTGAAAACAATGAACGTGAAGATGATGCCCAAGGTAGGAAGAGAAAGAAGAAAAAGTTGAGTAAAGAAAGCAAAAGTAAGGAGTATAATGTCTTTGAGAGGAATGAAGGTGAAGATGATGTGAAAGATAAGAAGAAGAAGAACAACAACAAACTGAGTGAAGAAGCAAAAAGTAAGGAGTATAATGAATTTGACAGCAATGAAGTTGAAGACAATGCCCAAGGTAAGAAGAAAAAAATGAGTAAAAAAAGCAAAAATGAGGAGTATAAGGTCTTTGAAAGGAAGGGAGGTGAAAGCTATTCCGAAGGTAAGAAGAGGAAGAAGAAAAAATTGAGTACAGAAAGCAAAAGTAAGGAGTATGAAGTCTTTGAAATGAATGAAGGTGAGGGTGAAGGTGATGCCAAAGGTAAGGAGAGGAAGAAGAAAAAATTGAGGGAGGAAGGCAAAAGTAAGGAGTGTAATGAATTTGAAAACAATAATGGTGAAGATGATGCTCAAGGTAGGAAGGGGAAGAAGAAAAAGTTGAGTAAAGAAAGCAAGAGTGAGGAGTATAATGTCTTTGAAACGAATGATGGCGAAGATGATGCCAAAGGTAAGAAGAAGAGAAAAAAACATGGTGAAGAAAGCAAAAGTAAGGAATATAATGTGTTTGAAAATAATGAAGGTGAAGGTGATGCCCAAGGTAAGAAGAGGAAGAAGAAAAAATTGAGTAAAGAAAACAAAAGTACGGAGTATAATGTATTTCAAAGGAATGAAGGTGAAGACAATGTTGAAGGTAGGAAGAGTAAGAAGGAAAAAATGATTGAAGACAGCAAAAGCAAGGACAAAAATGTAATGACAAAGAAGAAAGCCAAGGCAGATAATGGTGACTCTTCTAATCCTGCACAGAGTGTATTATCCAAACCCAAACGGGTAACTTTTTCTGATCAAGTGGATGTTTGTTGTGATGGCTTAGTCCGTGGGAAACGGTTCACACCAGAAGAAGATGAGCAGGTTAAAGCGGCAGTTTATAATTTTATAGAGTCTCGTGGTTTGGGAGATGAAGGTGTAGATATGGTTCTCCATTGCCAGGCTCATCAGGAAATTAGATATTGTTGGAAGGAAATTGCAGCAGCCTTACCCCACAGGCCAGTGTATAGTGTGTATTGTCGTGCCCATATTTTGTTTGAAGCGGATGAGAAAAGGTGGACACGTGAAGAGTATGAATTTTTACGGAAGGTCAAGGAAGAATATGGATATAATTGGAGACAAGTAGCTGACGCATTGGGCAAAAGTCGACTTCAAGTGAAGGATGCATGGCGTAGAGTGAAATTAAATACAAATAAAGGACGATGGACCCAAGAGGAGTATCAAAAGTTATTTGATTTAGTGAACGAGGACCTACGCGTGAGGGCTTCACAGGGTTATAGAAAATCAAAACATGGTATGTTGCGAGATAATATTGGTTGGGAGGCAATTGCTACAAAGTTGGCCACTAGAAACTCCGGGAGCTGCTGCCACAAGTGGTATGATAATTTAAGATCTCCCATGGTTGCTGCTGGTGCCTGGAGTGATACTGATGACTATCGCCTGGTCGATGCTTTATATAATTTGGATGCGTGCTGCATGGAGGAGGTGGATTGGGACAATCTGCTTGAGCATAGGACTGGTGAGGCATGTAGAAAACGGTGGAACCAAATTGTCCGATATATTGGGGAGCATGGGGGGAAGCCATTTGCTGAGCAGGTTGAAATTCTTGCAAAAAGATATTGCCCCAACTTATTGCAAGAAAGAGAGGCCTTTGATGCAAAACCTTTGGTTTGTTGA 2157 0.3913 MQMMKKKKSDAERQHDDYNEFKSNEDKDDNQYKMKDWKKKTLSEEGKSKEYNEFERNEGEDDAHSKKRKKKKWSTESKSKEYEVFEKNEGEVEADAKGKERKKKKLREEDKCKEYDEFENNEREDDAQGRKRKKKKLSKESKSKEYNVFERNEGEDDVKDKKKKNNNKLSEEAKSKEYNEFDSNEVEDNAQGKKKKMSKKSKNEEYKVFERKGGESYSEGKKRKKKKLSTESKSKEYEVFEMNEGEGEGDAKGKERKKKKLREEGKSKECNEFENNNGEDDAQGRKGKKKKLSKESKSEEYNVFETNDGEDDAKGKKKRKKHGEESKSKEYNVFENNEGEGDAQGKKRKKKKLSKENKSTEYNVFQRNEGEDNVEGRKSKKEKMIEDSKSKDKNVMTKKKAKADNGDSSNPAQSVLSKPKRVTFSDQVDVCCDGLVRGKRFTPEEDEQVKAAVYNFIESRGLGDEGVDMVLHCQAHQEIRYCWKEIAAALPHRPVYSVYCRAHILFEADEKRWTREEYEFLRKVKEEYGYNWRQVADALGKSRLQVKDAWRRVKLNTNKGRWTQEEYQKLFDLVNEDLRVRASQGYRKSKHGMLRDNIGWEAIATKLATRNSGSCCHKWYDNLRSPMVAAGAWSDTDDYRLVDALYNLDACCMEEVDWDNLLEHRTGEACRKRWNQIVRYIGEHGGKPFAEQVEILAKRYCPNLLQEREAFDAKPLVC 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02444 718 Coils Coil 89 109 - -
Vimu1g02444 718 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 512 559 IPR017930 -
Vimu1g02444 718 SMART sant 437 508 IPR001005 -
Vimu1g02444 718 SMART sant 509 556 IPR001005 -
Vimu1g02444 718 SMART sant 558 625 IPR001005 -
Vimu1g02444 718 SMART sant 629 680 IPR001005 -
Vimu1g02444 718 ProSiteProfiles Myb-like domain profile. 554 623 IPR001005 -
Vimu1g02444 718 Pfam Myb-like DNA-binding domain 513 570 - -
Vimu1g02444 718 PANTHER GB|AAC33480.1 142 717 - -
Vimu1g02444 718 MobiDBLite consensus disorder prediction 140 347 - -
Vimu1g02444 718 MobiDBLite consensus disorder prediction 75 131 - -
Vimu1g02444 718 Coils Coil 159 179 - -
Vimu1g02444 718 CDD SANT 512 554 IPR001005 -
Vimu1g02444 718 CDD SANT 561 623 IPR001005 -
Vimu1g02444 718 SUPERFAMILY Homeodomain-like 511 553 IPR009057 -
Vimu1g02444 718 ProSiteProfiles Myb-like domain profile. 625 678 IPR001005 -
Vimu1g02444 718 Gene3D - 514 553 - -
Vimu1g02444 718 Gene3D - 554 628 - -
Vimu1g02444 718 MobiDBLite consensus disorder prediction 368 405 - -
Vimu1g02444 718 ProSiteProfiles Myb-like domain profile. 512 553 IPR001005 -
Vimu1g02444 718 MobiDBLite consensus disorder prediction 1 419 - -
Vimu1g02444 718 MobiDBLite consensus disorder prediction 1 67 - -
Vimu1g02444 718 SUPERFAMILY Homeodomain-like 603 681 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02444 Vimu-Chr1 35439610 35441766 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02444 513 644 MYB Transcription Factor Family AT4G00540 27.857 6.92e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02444 - - var:108338141 1150.96