LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vimu1g02444	ATGCAGATGATGAAGAAGAAGAAATCAGATGCAGAAAGGCAGCATGACGACTACAATGAATTTAAGAGCAATGAAGATAAAGATGACAATCAGTACAAAATGAAGGACTGGAAGAAGAAAACACTGAGTGAAGAAGGAAAAAGTAAGGAGTATAATGAATTTGAAAGAAATGAAGGTGAAGATGATGCCCATAGTAAGAAGAGGAAGAAGAAAAAATGGAGTACAGAAAGCAAAAGTAAGGAGTATGAAGTCTTTGAAAAGAATGAAGGTGAAGTTGAAGCTGATGCCAAAGGTAAGGAGAGGAAGAAGAAAAAACTGAGGGAAGAAGACAAATGTAAGGAGTATGATGAGTTTGAAAACAATGAACGTGAAGATGATGCCCAAGGTAGGAAGAGAAAGAAGAAAAAGTTGAGTAAAGAAAGCAAAAGTAAGGAGTATAATGTCTTTGAGAGGAATGAAGGTGAAGATGATGTGAAAGATAAGAAGAAGAAGAACAACAACAAACTGAGTGAAGAAGCAAAAAGTAAGGAGTATAATGAATTTGACAGCAATGAAGTTGAAGACAATGCCCAAGGTAAGAAGAAAAAAATGAGTAAAAAAAGCAAAAATGAGGAGTATAAGGTCTTTGAAAGGAAGGGAGGTGAAAGCTATTCCGAAGGTAAGAAGAGGAAGAAGAAAAAATTGAGTACAGAAAGCAAAAGTAAGGAGTATGAAGTCTTTGAAATGAATGAAGGTGAGGGTGAAGGTGATGCCAAAGGTAAGGAGAGGAAGAAGAAAAAATTGAGGGAGGAAGGCAAAAGTAAGGAGTGTAATGAATTTGAAAACAATAATGGTGAAGATGATGCTCAAGGTAGGAAGGGGAAGAAGAAAAAGTTGAGTAAAGAAAGCAAGAGTGAGGAGTATAATGTCTTTGAAACGAATGATGGCGAAGATGATGCCAAAGGTAAGAAGAAGAGAAAAAAACATGGTGAAGAAAGCAAAAGTAAGGAATATAATGTGTTTGAAAATAATGAAGGTGAAGGTGATGCCCAAGGTAAGAAGAGGAAGAAGAAAAAATTGAGTAAAGAAAACAAAAGTACGGAGTATAATGTATTTCAAAGGAATGAAGGTGAAGACAATGTTGAAGGTAGGAAGAGTAAGAAGGAAAAAATGATTGAAGACAGCAAAAGCAAGGACAAAAATGTAATGACAAAGAAGAAAGCCAAGGCAGATAATGGTGACTCTTCTAATCCTGCACAGAGTGTATTATCCAAACCCAAACGGGTAACTTTTTCTGATCAAGTGGATGTTTGTTGTGATGGCTTAGTCCGTGGGAAACGGTTCACACCAGAAGAAGATGAGCAGGTTAAAGCGGCAGTTTATAATTTTATAGAGTCTCGTGGTTTGGGAGATGAAGGTGTAGATATGGTTCTCCATTGCCAGGCTCATCAGGAAATTAGATATTGTTGGAAGGAAATTGCAGCAGCCTTACCCCACAGGCCAGTGTATAGTGTGTATTGTCGTGCCCATATTTTGTTTGAAGCGGATGAGAAAAGGTGGACACGTGAAGAGTATGAATTTTTACGGAAGGTCAAGGAAGAATATGGATATAATTGGAGACAAGTAGCTGACGCATTGGGCAAAAGTCGACTTCAAGTGAAGGATGCATGGCGTAGAGTGAAATTAAATACAAATAAAGGACGATGGACCCAAGAGGAGTATCAAAAGTTATTTGATTTAGTGAACGAGGACCTACGCGTGAGGGCTTCACAGGGTTATAGAAAATCAAAACATGGTATGTTGCGAGATAATATTGGTTGGGAGGCAATTGCTACAAAGTTGGCCACTAGAAACTCCGGGAGCTGCTGCCACAAGTGGTATGATAATTTAAGATCTCCCATGGTTGCTGCTGGTGCCTGGAGTGATACTGATGACTATCGCCTGGTCGATGCTTTATATAATTTGGATGCGTGCTGCATGGAGGAGGTGGATTGGGACAATCTGCTTGAGCATAGGACTGGTGAGGCATGTAGAAAACGGTGGAACCAAATTGTCCGATATATTGGGGAGCATGGGGGGAAGCCATTTGCTGAGCAGGTTGAAATTCTTGCAAAAAGATATTGCCCCAACTTATTGCAAGAAAGAGAGGCCTTTGATGCAAAACCTTTGGTTTGTTGA	2157	0.3913	MQMMKKKKSDAERQHDDYNEFKSNEDKDDNQYKMKDWKKKTLSEEGKSKEYNEFERNEGEDDAHSKKRKKKKWSTESKSKEYEVFEKNEGEVEADAKGKERKKKKLREEDKCKEYDEFENNEREDDAQGRKRKKKKLSKESKSKEYNVFERNEGEDDVKDKKKKNNNKLSEEAKSKEYNEFDSNEVEDNAQGKKKKMSKKSKNEEYKVFERKGGESYSEGKKRKKKKLSTESKSKEYEVFEMNEGEGEGDAKGKERKKKKLREEGKSKECNEFENNNGEDDAQGRKGKKKKLSKESKSEEYNVFETNDGEDDAKGKKKRKKHGEESKSKEYNVFENNEGEGDAQGKKRKKKKLSKENKSTEYNVFQRNEGEDNVEGRKSKKEKMIEDSKSKDKNVMTKKKAKADNGDSSNPAQSVLSKPKRVTFSDQVDVCCDGLVRGKRFTPEEDEQVKAAVYNFIESRGLGDEGVDMVLHCQAHQEIRYCWKEIAAALPHRPVYSVYCRAHILFEADEKRWTREEYEFLRKVKEEYGYNWRQVADALGKSRLQVKDAWRRVKLNTNKGRWTQEEYQKLFDLVNEDLRVRASQGYRKSKHGMLRDNIGWEAIATKLATRNSGSCCHKWYDNLRSPMVAAGAWSDTDDYRLVDALYNLDACCMEEVDWDNLLEHRTGEACRKRWNQIVRYIGEHGGKPFAEQVEILAKRYCPNLLQEREAFDAKPLVC	718

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vimu1g02444	718	Coils	Coil	89	109	-	-
	Vimu1g02444	718	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	512	559	IPR017930	-
	Vimu1g02444	718	SMART	sant	437	508	IPR001005	-
	Vimu1g02444	718	SMART	sant	509	556	IPR001005	-
	Vimu1g02444	718	SMART	sant	558	625	IPR001005	-
	Vimu1g02444	718	SMART	sant	629	680	IPR001005	-
	Vimu1g02444	718	ProSiteProfiles	Myb-like domain profile.	554	623	IPR001005	-
	Vimu1g02444	718	Pfam	Myb-like DNA-binding domain	513	570	-	-
	Vimu1g02444	718	PANTHER	GB\|AAC33480.1	142	717	-	-
	Vimu1g02444	718	MobiDBLite	consensus disorder prediction	140	347	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vimu1g02444	Vimu-Chr1	35439610	35441766	Proximal

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vimu1g02444	513	644	MYB Transcription Factor Family	AT4G00540	27.857	6.92e-06	47.4

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vimu1g02444	-		-	var:108338141	1150.96

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