Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02443 CCTTTCTTCCTCAACAATATTCTTCTTCTTCTTCACCTTGTTCGTACAAGCGGCGTGTTATCGGTGCCGGTGGTTCTCTCTTTTCCTGCATTTCTGGTTCTAGAAGCTTCGCATTCCTCAATCCACCGTCATCTTTTACGTTCTTCTCTCTCCTCTAGGTTTTCCAATTCGCGTGCTGATGCTTCATTCGGCGTCTCACGCCACGCACTCCAATGCCGCTGCTGTGTACACTGTAACTGCTGTATCAAACACGATGATTCCTTCCTGTTGTTTACGCTGCTTAATCAATTCGCATGCTGCTATTATTTTGCTCTCATGAATGACTATCAACGATTTCACGAGCCTTTGTCGTTTTGCCGCGTGAAATTTCTTGGAGAGAGTTCATATCAAATCACTTTGGAATTCATGGAAAGGATTTTAAATGGAAACGAAAGTCTTTTGCCTACTAGGCAGAGGTGGCTACTTGAGAAGGAGTTGAACTCAGTTTCTATGAATGTCCCATTTGCTTCATCTGAACGAGCTAAAACATTGTTACTTAAACCTTTTAGGCAATCTCTGTCTCAAGGTCCTATTGTGACTCCAAGACCAAAACTTCCTCATTATGACCATCATCACCACAGTGGTAAATCTTATCCTGTGGTTCCATCCCCCTATAAAGACCCAGCTTGTAGCCAAATCTGTACTGATCCATTCACTGCAACTCCTTTTGGTTCACCTTGTGGTTGTATATTTCCCATGAAAGTCAGACTAGTACTGGGTGTAGCTCCTCTGGTTGTTTTTCCAGTCATTACTGAGTTAGAGATTGAAGTTGCATCTGGAACATATTTGAAGCAGAGCCAAGTGAGGATAATAGGTGTCAGTGCTGACAATCAAAATCAGTGGAGAACCATTGTCGATATTGACTTGGTTCCACTTGGGGAAAAATTTGACAATACCACTGCACTTCTATTATATGAGAGGTTTTGGAACAAAAAAGTTCATTTAAATAGGAGTCTTTTTGGTGATTATGCCACATTGTACGTTGCTTATCCAGGTATTTCATCATCAGTGCCACCTGGATATCTAATTGGGAGTAGTCCCCAGCCCAGTGATACCGTTGGTTTTCTCCCAAAAACTGCTTCCTTCATGAATGAGCACGAGAAATTGACTCTTAAAACCATACTCATTATTTCTCTATGTTCTGCTGTACCCTTTTTAGTTTTGGTTGGAGCATTTTTCATTTTGTTGAAATGGTGGAAAGTTAGGAGCTCATCAAGAGCTATCGGCCCTTCACTCACGTCATATCTAAATAAGAGATATGGCTTGGAATCTATGTTGTCAGGCAGAATTATGAGCTCAAGATCTATGTCCCTTGTGTCCGCTATTGCTGCTTCTATTCTCTCCGTTAAAACATTTTCCTTTTCGGAGCTTGAGAAAGCAACAGATAAATTCAATTCTCAGAGAGTATTAGGAGAAGGAGGATTTGGACGTGTTTATTCTGGGACATTGGATGATGGAAATGAAGTTGCAGTTAAGCTGCTAACAGGGAATGGTCAGAATAGAGACCGTGAATTTATTGCAGAAGTTGAGATGCTAAGCCGTTTGCATCATCGTAATCTTGTGAAACTCTTTGGAATATGCATAGAAGGGAGAAGGCGTTGCTTGGTTTATGAGCTTGTTTGCAATGGCAGTGTTGAGTCTCATTTGCATGTTCCACTTCGCGGCTTGGGTTTGAACCTAACTGCCATAGCATGTGGCGGTGGTTCTGTGTGTATGTATGTTGCCCCAGAATATGCAATGACAGGCCATTTACTAGTTAAAAGTGATGTTTATAGTTATGGTGTTGTGCTGCTTGAGCTTATAACAGGCAGAAAACCAGTGGACATGTCTCAACCTCAAGGAGAGGAGAATCTTGTAACGTGGGCTCGACCACTGTTGAGATACAGGGAAGGTTTAGAAAAGCTGGTGGATCCATTTTTGGCTGGAAAGTATGACTTCGATGAGATGGCAAAGATGGCGGCTATTGCTTCCATGTGCGTCCACCCGGAGGTCACTCAAAGGCCTTTCATGGGTGAAGTTGTGCAGGCTCTTAAGTTGATCTACAACGACACCAATGAGAGTGAGAAGGACTCTTTGTGCCATGAATCGGATTTTGGAGGTGACCTTGTGTTTTCTGATAGCAGTTGGTTGGATGGTGAAGGGGTAACCCCGAGATTAACTTATGGACCTGAATCTTCCCTCATCACTATGGATTACAGTTCTGGTCTACTAGAAATGGAAAAGGGAACATCAAGCTTGAATGCAGATGAGACATCTTTGCCAATCAGGCACGGGAATAGATCAGGCCCCTTGAAAACAGCCCGGGGTAAGCCATCCTTTACTAAGCTTACTCGAAGTCGCAGTGATCATGTCGTATCCTTCCAAGCTTGTTTGTAA 2415 0.4277 PFFLNNILLLLHLVRTSGVLSVPVVLSFPAFLVLEASHSSIHRHLLRSSLSSRFSNSRADASFGVSRHALQCRCCVHCNCCIKHDDSFLLFTLLNQFACCYYFALMNDYQRFHEPLSFCRVKFLGESSYQITLEFMERILNGNESLLPTRQRWLLEKELNSVSMNVPFASSERAKTLLLKPFRQSLSQGPIVTPRPKLPHYDHHHHSGKSYPVVPSPYKDPACSQICTDPFTATPFGSPCGCIFPMKVRLVLGVAPLVVFPVITELEIEVASGTYLKQSQVRIIGVSADNQNQWRTIVDIDLVPLGEKFDNTTALLLYERFWNKKVHLNRSLFGDYATLYVAYPGISSSVPPGYLIGSSPQPSDTVGFLPKTASFMNEHEKLTLKTILIISLCSAVPFLVLVGAFFILLKWWKVRSSSRAIGPSLTSYLNKRYGLESMLSGRIMSSRSMSLVSAIAASILSVKTFSFSELEKATDKFNSQRVLGEGGFGRVYSGTLDDGNEVAVKLLTGNGQNRDREFIAEVEMLSRLHHRNLVKLFGICIEGRRRCLVYELVCNGSVESHLHVPLRGLGLNLTAIACGGGSVCMYVAPEYAMTGHLLVKSDVYSYGVVLLELITGRKPVDMSQPQGEENLVTWARPLLRYREGLEKLVDPFLAGKYDFDEMAKMAAIASMCVHPEVTQRPFMGEVVQALKLIYNDTNESEKDSLCHESDFGGDLVFSDSSWLDGEGVTPRLTYGPESSLITMDYSSGLLEMEKGTSSLNADETSLPIRHGNRSGPLKTARGKPSFTKLTRSRSDHVVSFQACL 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02443 804 FunFam receptor-like serine/threonine-protein kinase ALE2 450 552 - -
Vimu1g02443 804 Gene3D Transferase(Phosphotransferase) domain 1 573 712 - -
Vimu1g02443 804 Pfam Protein tyrosine and serine/threonine kinase 479 564 IPR001245 GO:0004672|GO:0006468
Vimu1g02443 804 Pfam Protein tyrosine and serine/threonine kinase 584 689 IPR001245 GO:0004672|GO:0006468
Vimu1g02443 804 MobiDBLite consensus disorder prediction 761 784 - -
Vimu1g02443 804 SUPERFAMILY Protein kinase-like (PK-like) 461 691 IPR011009 -
Vimu1g02443 804 ProSiteProfiles Protein kinase domain profile. 477 804 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02443 804 PANTHER OS01G0750732 PROTEIN 222 562 - -
Vimu1g02443 804 ProSitePatterns Protein kinases ATP-binding region signature. 483 505 IPR017441 GO:0005524
Vimu1g02443 804 Gene3D Phosphorylase Kinase; domain 1 450 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02443 Vimu-Chr1 35409261 35416429 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02443 586 791 Receptor kinase-like Gene Family AT5G56890 52.153 5.70e-49 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vimu1g02443 PK_Tyr_Ser-Thr 6.3e-07 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02443 - - dcr:108220534 602.053