Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02416 GGAGTTCTCGCTCTGTTACTTCTCCGCATACTTGAACGCCCCTTGTTATTTTTCTCCACTGTCTATGTGCCATTACTTCCTTTTCTACTTCACCACTGTTTGGATCAGGGATTGTGGTTCATGAAGGAGGTATTCAATGAGATTTACAGGACTGGTTCTGCGGCATTGTTTTTGAAGTTTCGGGATTCCAGTTTGGAGAAGTGTTCTGAGGGCAATTATTCTGAGACTAAAATTTCACAGTCAGGGATATTTAGAACTACATTAAGTTCAGTTTCGGAGAAGTTTCAAAATGGATTGGAATCTGGTTCTGAGAGGATGAAAAGATTCAGAACATCATTCAAATCTTTTTCCTTTAGCAGTGTTCTTTCTAGAAGCTCTAGTTCTAGAAAGAAAATACTTGATCCACAGGGTCCATTCCTTCAAAGGTGGAACAAGATTTTTGTATTATTATGTGTTATCGCAGTATCACTGGATCCTTTGTTCTTTTATGTCCCGGTCATTGATGATGAGAAAAAATGTCTTTCACTGGACATTAAGATGGAGATTACAGCAACTGTCTTAAGATCTTTCTCTGATGCTTTTTATATAGTCCACATGATTTTCCAATTTCGAACTGGATTCATTGCTCCCTCTTCTCGTGTATTTGGAAGAGGTGTTTTGGTTGAAGATTCTTGGGCAATAGCAAGGAGGTATCTATCATCATATTTCTTAGTTGACATTCTTGCTGTTCTTCCCCTCCCACAGGTGGTGATTCTAGTTATCATTCCAAAGATGAGTGGTTTTAAATCACTTAATACCAAGAACTTGCTGAAATTTGTTGTCTTCTTCCAATATGTGCCTCGTTTATTGCGGATCATTCCATTATATAGAGAAGTTACAAGGGCCTCTGGCATTCTCACTGAAACCGCATGGGCTGGAGCTGCATTTAATCTCTTTCTTTACATGCTTGCAAGTCACGTTGCTGGTGCCTTTTGGTACTTGTTTTCTATAGAGCGAGAAACGACATGTTGGCAAGAAGCCTGTCGAAGTAATACAACAGTGTGTAACAAGGCAGATATGTATTGCAATGATTATTGGGGTGGGTTGAGCAAAATTTCGACATTCCTGAATACTTCTTGCCCAATTCAGAATGAAGATAAAAATCTCTTTGATTTTGGAATGTTCCTTGATGCTCTTCAATCTGGTGTTGTGGAGTCAAGAGATTTTCCACAAAAATTCTTTTACTGCTTTTGGTGGGGCTTAAAAAATTTGAGCATAGAAATGTTTATGATAGTTCCCTCTTATGCTGGAGGACTTGTGTTTACTACATCTCTTCCTTCCAAAGTGCATGCATCTTCAGTTCTTAATCTGTTTATTGCCTCAATAAAAATGCTACTACCTGGGTTGGGGATTCTCAGCCAGCATGAATTTCTCTTGGTCAGAACCTGGCAACGAGTACCTATGTTTGGGAAATATGTTTTGCAGTTTTCATTTCTGTATCTGACATATTTGCAGTCAACAACCACAAGATTGGAGGAGATGAGAGTAAAGAGGAGAGATGCAGAACAGTGGATGGCTCACCGATTACTTCCCGACGGCCTGCGAGTGCGAATCAGACGATATGAACAGTACAAATGGCAAGAAACCAGAGGCGTAGATGAAGACAATTTGGTGCCAATGTTTGAGAAAATGGATGAACAACTTCTGGATGCAATGTGTGACCGTCTCAAGCCGGTGCTGTTCACCGAAGAAAGCTACATTGTCAGGGAAGGAGACCCAGTTGATGAGATGCTGTTCGTAATGCGTGGTAAGTTATTGACCATTACAACGAACGGTGGAAGAACTGGTTTCTTCAACTCTGAGTATCTCAAAGCTGGTGACTTTTGTGGAGAGGAGCTTCTCACATGGGCCTTGGATCCTCATTCCTCATCCAGCCTTCCCACTTCAACAAGAACTGTTCAAACTCTTTCAGAAGTGGAAGCCTTTGCCCTCAAAGCTGATGACTTGAAGTTTGTGGCATCACAGTTTCGGCGGCTTCACAGCAAGCAGCTGCGCCACACTTTCCGGTTCTACTCGCAACAATGGCGAACCTGGGCGGCGTGCTTCATTCAAGCGGCGTGGCGGCGGTATAGTAAGAGGAAGCTTGAAGAATCCCTGGTTGAAGAAGAGGAGAATAGACTGCAAAATGTGTTGGCTAAATCAGGTGGAAGCTCACCAAGCCTTGGTGCTACAATATATGCTTCAAGGTTTGCTGCTAATGCACTTACATTGCTTCGCCGTAATGGTGCAAAGAAGGGTAGGGTGCCTGAGAGATTACCCCCTATGCTCCTTCAGAAGCCTGCAGAACCTGATTTTACTGCGGATGAGGAATAG 2352 0.4222 GVLALLLLRILERPLLFFSTVYVPLLPFLLHHCLDQGLWFMKEVFNEIYRTGSAALFLKFRDSSLEKCSEGNYSETKISQSGIFRTTLSSVSEKFQNGLESGSERMKRFRTSFKSFSFSSVLSRSSSSRKKILDPQGPFLQRWNKIFVLLCVIAVSLDPLFFYVPVIDDEKKCLSLDIKMEITATVLRSFSDAFYIVHMIFQFRTGFIAPSSRVFGRGVLVEDSWAIARRYLSSYFLVDILAVLPLPQVVILVIIPKMSGFKSLNTKNLLKFVVFFQYVPRLLRIIPLYREVTRASGILTETAWAGAAFNLFLYMLASHVAGAFWYLFSIERETTCWQEACRSNTTVCNKADMYCNDYWGGLSKISTFLNTSCPIQNEDKNLFDFGMFLDALQSGVVESRDFPQKFFYCFWWGLKNLSIEMFMIVPSYAGGLVFTTSLPSKVHASSVLNLFIASIKMLLPGLGILSQHEFLLVRTWQRVPMFGKYVLQFSFLYLTYLQSTTTRLEEMRVKRRDAEQWMAHRLLPDGLRVRIRRYEQYKWQETRGVDEDNLVPMFEKMDEQLLDAMCDRLKPVLFTEESYIVREGDPVDEMLFVMRGKLLTITTNGGRTGFFNSEYLKAGDFCGEELLTWALDPHSSSSLPTSTRTVQTLSEVEAFALKADDLKFVASQFRRLHSKQLRHTFRFYSQQWRTWAACFIQAAWRRYSKRKLEESLVEEEENRLQNVLAKSGGSSPSLGATIYASRFAANALTLLRRNGAKKGRVPERLPPMLLQKPAEPDFTADEE 783
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02416 783 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 110 551 - -
Vimu1g02416 783 CDD CAP_ED 553 684 IPR000595 -
Vimu1g02416 783 SUPERFAMILY cAMP-binding domain-like 551 671 IPR018490 -
Vimu1g02416 783 SMART cnmp_10 553 684 IPR000595 -
Vimu1g02416 783 Gene3D - 144 437 - -
Vimu1g02416 783 SUPERFAMILY Voltage-gated potassium channels 134 418 - -
Vimu1g02416 783 Pfam Cyclic nucleotide-binding domain 574 664 IPR000595 -
Vimu1g02416 783 Gene3D Jelly Rolls 551 671 IPR014710 -
Vimu1g02416 783 Coils Coil 706 726 - -
Vimu1g02416 783 MobiDBLite consensus disorder prediction 756 783 - -
Vimu1g02416 783 ProSiteProfiles cAMP/cGMP binding motif profile. 553 637 IPR000595 -
Vimu1g02416 783 FunFam Cyclic nucleotide-gated ion channel 1 551 669 - -
Vimu1g02416 783 Pfam Ion transport protein 142 422 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02416 Vimu-Chr1 34994897 35002108 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02416 57 782 Ion Channels AT5G53130 66.888 0.0 983
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02416 K05391 - egr:104437953 950.273
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02416 1 34994897 35002108 Vimu1g02416 1 34994897 35002108 ECH