Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02412 ATGGGTCAAAGATACGTGGCGAAATGTAAGAAACCACTAGCGGGATTGCAGAGGAAAGCGGTACACAGAAAAAGCATGCAGATAGAGAAACACCATTCGATTTCGAAGATGGCGCCGGCAGAACAACGTGCAATACCACGAGCGAGGTGGTTTTGTTTTGTGGCTCACTTTTCACCGTCCATGTCTTCAACCGTTGGCCAGACGATCAAGTGCAAAGCTGCCATTGCATGGGAGGCAGGGAAACCACTGGTGATCGAAGAAGTAGAGGTGGCGCCACCCCAAGCCGGGGAAGTCCGTTTGAAGATCCTCTACACCTCCCTTTGCCACACTGATGTTTACTTTTGGGAAGCCAAGGGCCAGACTCCATTGTTTCCTCGTATTTTTGGCCATGAAGCTTCAGGTGTTGTTGAGAGCGTTGGCGAGGGTGTCACTCATTTGCAACCAGGAGACCATGCCCTCCCTGTGTTCACAGGAGAGTGTGGGGAATGCGTACATTGTAAATCAGAAGAAAGCAACATGTGTGAGCTCCTCCGGATCAACACCGATAGGGGTGTAATGATCAATGATGGTAAATCAAGGTTCTCTAAGGATGGCCAACCCATACACCATTTCCTGGGAACCTCCACATTCAGTGAATACACAGTTCTCCATGCAGGATGTGTTGCAAAGATCAACCCAGCTGCTCCACTTGACAAAGTTTGTGTTCTCAGTTGTGGAATTTGCACAGGTCTTGGTGCTACTGTTAATGTAGCAAAACCAAAACCTGGTTCCTCTGTTGCTATTTTCGGACTTGGAGCTGTTGGCCTTGCGGCTGCAGAAGGGGCTAGGATTTCCGGTGCTAAAAGAATCATTGGAATTGATTTAGTTTCAGATAGATTTGAAGAAGCTAAGAAGTTTGGTGTTAACGAGTTTGTGAATCCAAAGGATCATGATAAACCTATTCAACAGGTAATTGCTGAAATGACCAATGGAGGTGTGGACCGGGCTGTTGAATGTACTGGCAGCATCCAGGCCATGATTTCTGCCTTTGAATGTGTCCATGATGGTTGGGGTGTTGCTGTACTTGTTGGTGTGCCTAGTAAAGATGATGCATTCAAAACTGCTCCTATTAATTTCCTGAATGAGAGGACTCTTAAAGGAACCTTTTATGGTAACTACAAACCACGCAGTGACCTTCCTGGTGTTGTGGAGAAGTACCTGAGCGGGGAGCTAGAAGTAGATAAGTTCATCACTCACTCAGTTTCCTTCTCAGAGATCAACAAAGCCTTTGAATACATGCTGAAAGGACAGTCCATTAGGTGTCTTATTCGCATGCAAGACTGA 1323 0.4656 MGQRYVAKCKKPLAGLQRKAVHRKSMQIEKHHSISKMAPAEQRAIPRARWFCFVAHFSPSMSSTVGQTIKCKAAIAWEAGKPLVIEEVEVAPPQAGEVRLKILYTSLCHTDVYFWEAKGQTPLFPRIFGHEASGVVESVGEGVTHLQPGDHALPVFTGECGECVHCKSEESNMCELLRINTDRGVMINDGKSRFSKDGQPIHHFLGTSTFSEYTVLHAGCVAKINPAAPLDKVCVLSCGICTGLGATVNVAKPKPGSSVAIFGLGAVGLAAAEGARISGAKRIIGIDLVSDRFEEAKKFGVNEFVNPKDHDKPIQQVIAEMTNGGVDRAVECTGSIQAMISAFECVHDGWGVAVLVGVPSKDDAFKTAPINFLNERTLKGTFYGNYKPRSDLPGVVEKYLSGELEVDKFITHSVSFSEINKAFEYMLKGQSIRCLIRMQD 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02412 440 SMART PKS_ER_names_mod 80 436 IPR020843 GO:0016491
Vimu1g02412 440 PANTHER ALCOHOL DEHYDROGENASE 66 436 - -
Vimu1g02412 440 FunFam alcohol dehydrogenase 1-like isoform X1 79 242 - -
Vimu1g02412 440 Pfam Zinc-binding dehydrogenase 266 393 IPR013149 -
Vimu1g02412 440 CDD alcohol_DH_plants 69 437 - -
Vimu1g02412 440 Gene3D - 243 381 - -
Vimu1g02412 440 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 229 403 IPR036291 -
Vimu1g02412 440 Pfam Alcohol dehydrogenase GroES-like domain 96 223 IPR013154 -
Vimu1g02412 440 SUPERFAMILY GroES-like 64 247 IPR011032 -
Vimu1g02412 440 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 129 143 IPR002328 GO:0008270|GO:0016491
Vimu1g02412 440 SUPERFAMILY GroES-like 388 437 IPR011032 -
Vimu1g02412 440 Gene3D - 79 430 - -
Vimu1g02412 440 FunFam Alcohol dehydrogenase class-P 243 381 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02412 Vimu-Chr1 34942706 34945622 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02412 97 387 Monolignol Biosynthesis Gene Families AT1G72680 25.597 1.41e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02412 K18857 - gmx:100800668 716.842
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02412 1 34942706 34945622 Vimu1g02412 1 34942706 34945622 ECH
Vimu1g02412 1 34942706 34945622 Vimu10g02394 10 34894137 34897239 PCT