Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02406 ATGCCTTTTCAGAAGGAATCTACTTTTCCAGACTCGCTCAAGCAAATCTTTAGGTTCGCTCGGGTGAAAGAAAAAGTTACAAACAACTTTCTTTGCACTGTCAGACACTTTTCGGAGGAAATCTTGACTTTGCACGTCAGCAACTCACTCAAGTTAATCCTCCAGCTCGCTCAAGCAAACTTCAAGCCTTTAAAATGCCAGATTCACATTCTAATGTGCGAAGAAAGGAAGCTTGAAATCAAAGGAAATGAAGCATCCAAGAGCCCAACACAAGTTAGAGCTCGCCCAACCAAAATAGGATCTTGCCCAATGGAGGCAGCAGCTCGTCCAGCGCCAGCATGTCTAGAAGCTTCATATGATCTTTGTTGTTGCCAACGAAAATCATCTACCGCTTATCGCCAGCGAGTTGACTCTTTCCACGTTTTTCTTGCCTCAAGCATGAGTTACACTTGTAAAGTAGCCGCTGGGAGAATGACTTCCTCTGAAAGCTTGCGAAGTGTTGAAGAAGATGATTCTACAGCTAAGAAAAAGCGCGACTTGTTCTACGATGTTTATGGACCCGAAGGCAAGGCAGAGGTTGTTTTCAAGTCACCAGAAGATAATTCAGTTCTTGATCTAAAGGATATTCAAGGACTTGTAACTTGGGTGCTTGGTGAAGGATTTATGCCGTCATGGGTTTTTATCAAGAATAAACCCCTTATTCCCAAAGTGGTTATGCTCTATATGCCAGGCCTAGATGCAGCCTTGTTCTTGTCGCTGTCTAAAATGCTTCATAATTTAAAGAAAATCTGTGGTAAACCAAGGCCTGTCCTGGCTCTTAGCTGTGTGTCAGATAGTATGCAGACGATAGATGCACTCCTAACATGCAAGATGAAAAGAAAAAGGGATGAGAATAGACCTGCTCTGACATCACATCAAGAAGAAGGTTCTCATGATACAAACAGTCTAACATTCACAGAGCTTACGAAAGACATACCTTTCCCTGTTACATACTATACACTAACTGAGAAAGAGCTGGAAGAGAATGGATATTCTCTTAATCAGCCAGGTTTTCTTTCAACTTTGCCTGCACCTCCAGGATCTCCTTTTCATGAGATGTTGGCACTTGATTGTGAGATGTGCATAACAAATGAAGGTTTTGAGCTGACAAGAATTACTCTAGTGGACATCAAAGGACAGGTTTTGATAGATAGATTGGTTAAACCGTCAAATGCTATCATTGACTACAACACAAGATTTAGTGGAATAACGCCTGAGATGTTAGATGGGGTGACAACAAGTCTGAGAGACATTCAGGAACTGTTCCTAAAGTTTGTTTACGAGGAGACTATCCTTGTTGGGCATTCTCTGGAAAATGATTTATTAGCATTGAAAATATCCCATGATGTGATCATAGACACGGCAGTGTTGTACAGACACCCCCGAGGAACATCTCATAAAAAAGCTCTACGGTTTCTTGCTAAGAAATTTTTAGCAAGGGAGATACAACAATCAGCGAATGGACATGACAGCATCGAAGATGCTAGAGCTACCCTGGAATTGGCACTATTGAAGATCAGAAATGGGCCCGACTTTGGTTCCCCTCCATCCTTTACGAGGAAAAAGTTCCTTTCTATTCTGAGTGAGTCTGGCAAAACTTCGTCATTGATTGATGATATATCCATAGTAAAACGGTATGCCTCTGAGTCCTCTAATGCAATTCCAGTGATCTCTGATGATGAAGCACTTGCAAAGACCAAGAAGGAGGTTAAGAATGACAAGGTACATTTTATCTGGACACAATTTTCGGAGCTACACTCATACCTGAAGAAGCAAGCTGAAGATTCTGATAGTTTGAATGAAAGACTTGCCGAGATGATGGCATTGCAAACGTGCCAGAATAATTCTGCTAAACAGAAAGGCTTCAAGTTGAAAGCACCTGCAGAACTGAAGGAAATTATGGCTCGCATGGATGCTAGAATTTATAATCTCTACTTGTTGAGGAGAATGCTTGCAGAGCAGAATGAAAGTAATTTATGTCGTGAGAAGATTGTGGAAATTTTGGCAGAATTTCAGGCCCAAGCAGAAGTAGCATTGTGTTTTGTAGGCGTCAAGCATTGA 2100 0.4152 MPFQKESTFPDSLKQIFRFARVKEKVTNNFLCTVRHFSEEILTLHVSNSLKLILQLAQANFKPLKCQIHILMCEERKLEIKGNEASKSPTQVRARPTKIGSCPMEAAARPAPACLEASYDLCCCQRKSSTAYRQRVDSFHVFLASSMSYTCKVAAGRMTSSESLRSVEEDDSTAKKKRDLFYDVYGPEGKAEVVFKSPEDNSVLDLKDIQGLVTWVLGEGFMPSWVFIKNKPLIPKVVMLYMPGLDAALFLSLSKMLHNLKKICGKPRPVLALSCVSDSMQTIDALLTCKMKRKRDENRPALTSHQEEGSHDTNSLTFTELTKDIPFPVTYYTLTEKELEENGYSLNQPGFLSTLPAPPGSPFHEMLALDCEMCITNEGFELTRITLVDIKGQVLIDRLVKPSNAIIDYNTRFSGITPEMLDGVTTSLRDIQELFLKFVYEETILVGHSLENDLLALKISHDVIIDTAVLYRHPRGTSHKKALRFLAKKFLAREIQQSANGHDSIEDARATLELALLKIRNGPDFGSPPSFTRKKFLSILSESGKTSSLIDDISIVKRYASESSNAIPVISDDEALAKTKKEVKNDKVHFIWTQFSELHSYLKKQAEDSDSLNERLAEMMALQTCQNNSAKQKGFKLKAPAELKEIMARMDARIYNLYLLRRMLAEQNESNLCREKIVEILAEFQAQAEVALCFVGVKH 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02406 699 Coils Coil 602 622 - -
Vimu1g02406 699 SMART exoiiiendus 365 524 IPR013520 -
Vimu1g02406 699 Pfam Exonuclease 368 514 IPR013520 -
Vimu1g02406 699 CDD REX1_like 367 516 IPR034922 -
Vimu1g02406 699 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 163 532 IPR047021 GO:0004527
Vimu1g02406 699 FunFam RNA exonuclease NEF-sp 363 526 - -
Vimu1g02406 699 SUPERFAMILY Ribonuclease H-like 366 519 IPR012337 -
Vimu1g02406 699 Gene3D - 363 524 IPR036397 GO:0003676
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02406 366 514 C2H2 Transcription Factor Family AT3G27970 26.946 6.74e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02406 K14570 - gmx:100802793 875.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02406 1 34836420 34854323 Vimu1g02406 1 34836420 34854323 ECH