Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02405 ATGTCATTGGTTATATCTACAGAGTTGGCTGATGCATCATATAGGAATGCCAAGCTCTACACACTAAAGGGAACTGATGTTACACCTGATCTGTCCTCCCACAATTTTGTTCCGGATAAGCACAGAAACATGTATATCACAGATTCTTACTCCAGTGAGAATTATGAAAAGTACTTCCGTGATTCACCATCAGAAGAACTGATAGAACCGTCTAGTTCCAGCATATCAGGAAACTCAGTTCACCCTGACTCTTCTTACCTTCTCAGAGCTAGTTCAGGAGCTTCTGTGATTGTTAATAACCCATTTGACAGTCGTATCTTGTCTACAAGGCGTCACAATGCCTATCAGTCCAGTTTTGAATCAGATTTTCTGGAAAATAGGAGCCCTGATGGCCTCGACTTTGATAGTGAAATGAGATTAAAACTACAAGAATTGGAGAGGGCTTTGTTTTCTGATGAAGAAGAGGAGGAAGACATATTTGAGACTGTCCAAAGCATGGACATTGATCCTGACATGGCTGAGTGGGCCAATCCACTTCAAGGTATGCTACTTCATGACTCACCAAAGGAGTCCTCATCCTCTGATTCTTCCAATATTAGCAGCATAAGTAGCACCACCAAAGAAACTTCACAGAACTCACCCCAGACCCCCAAACAATTACTTTATGAATGTGCTAGAGCGCTGTCAGAAGGAAATGAAGAGCAAGCCAAATCTATGATAAACAATCTCAGGCAAATGGTCTCAATTCAGGGGGAACCTTCTCAAAGAATTGCAGCCTACATGGTGGAAGGGCTTGCAGCTCGCGTTGCTTCATCCGGAAAATGCATCTATCAAGCATTGAGATGCAAAGAACCTCCTTCTTCAGATCGTCTAGCAGCTATGCAGATCCTATTTGAGGTCTGTCCGTGCTTTAAATTCGGATTCATAGCTGCAAATGGTGCGATAGTTGAGGCTGTTAGAGATGAAAAGAAGGTTCACATAATAGACTTTGACATCAGCCAAGGAACACAGTACATAACTCTAATACAAACACTTGCTTCAATGCCAGGTAGGCGACCTCATGTGAGATTAACTGGAGTGGATGATCCTGAGACTGTGCAGCGCTCTGTTGGTGGCATGAACATCATAGGAAAAAGGCTTGAAAAGCTGGCAGAGGAACTTGGATTGTCATTTGAGTTTCGAGCAGTGGCTTCAAAGACCTCAATTGTCTCACCATCAATGCTCAATTGTCGTCCGGGGGAAGCACTTGTAGTGAACTTTGCATTCCAGCTTCATCACATGCGTGATGAAACTGTATCCACAGTGAACGAGAGAGATCAACTTCTTCGCATGGTTAAGAGCTTGAATCCAAAACTTGTGACAATTGTGGAGCAGGACATGAACACCAACACCTCCCCTTTTCTCCAAAGATTTGTTGAAGCATACAATTACTATTCTGCTGTGTTTGACACTCTTGATGCAACTCTGCCTAGGGATAGCCAGGACAGGATGAATGTTGAAAGGCAATGCTTGGCAAAGGACATTGTCAACATTGTGGCTTGTGAGGGCGAGGATCGAATAGAACGGTACGAAGTCGCCGGAAAATGGAGGGCAAGGTTGACCATGGCAGGCTTCACTCCATGTCCAATGAGCACAAATGTTAGAGAAGCAATTAGGAAACTCATAATTACACAATACTGTGACAGGTTCAAGATAAAGGAGGAAATGGGAGCACTTCATTTTGGGTGGGAAGACAAAAACTTAATTGTTACTTCAGCATGGAAGTGA 1767 0.4335 MSLVISTELADASYRNAKLYTLKGTDVTPDLSSHNFVPDKHRNMYITDSYSSENYEKYFRDSPSEELIEPSSSSISGNSVHPDSSYLLRASSGASVIVNNPFDSRILSTRRHNAYQSSFESDFLENRSPDGLDFDSEMRLKLQELERALFSDEEEEEDIFETVQSMDIDPDMAEWANPLQGMLLHDSPKESSSSDSSNISSISSTTKETSQNSPQTPKQLLYECARALSEGNEEQAKSMINNLRQMVSIQGEPSQRIAAYMVEGLAARVASSGKCIYQALRCKEPPSSDRLAAMQILFEVCPCFKFGFIAANGAIVEAVRDEKKVHIIDFDISQGTQYITLIQTLASMPGRRPHVRLTGVDDPETVQRSVGGMNIIGKRLEKLAEELGLSFEFRAVASKTSIVSPSMLNCRPGEALVVNFAFQLHHMRDETVSTVNERDQLLRMVKSLNPKLVTIVEQDMNTNTSPFLQRFVEAYNYYSAVFDTLDATLPRDSQDRMNVERQCLAKDIVNIVACEGEDRIERYEVAGKWRARLTMAGFTPCPMSTNVREAIRKLIITQYCDRFKIKEEMGALHFGWEDKNLIVTSAWK 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02405 588 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 198 583 IPR005202 -
Vimu1g02405 588 ProSiteProfiles GRAS family profile. 208 588 IPR005202 -
Vimu1g02405 588 MobiDBLite consensus disorder prediction 183 217 - -
Vimu1g02405 588 MobiDBLite consensus disorder prediction 186 217 - -
Vimu1g02405 588 Pfam GRAS domain family 218 588 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02405 Vimu-Chr1 34826156 34830654 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02405 1 588 GRAS Transcription Factor Family AT1G21450 60.368 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vimu1g02405 GRAS 5e-135 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02405 - - gmx:100807048 974.541
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02405 1 34826156 34830654 Vimu1g02405 1 34826156 34830654 ECH
Vimu1g02405 1 34826156 34830654 Vimu10g02364 10 34483929 34487736 PCT