Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02403 ATGAGATTAAGGTGGCGCAATCATCTTAATCCTAGTGTTAACAGAAACTCTTTTACGAAAGAAGAAGAAGAGAGGCTGGTTGCAGCTCGAGAGATTTATGGAGCAAAATGGGCAACCATAGCCAAACTGTTCGAGGGGAGAACCGACAATGCCTTGAAAAACCATTGGCACGTTTTGATCGCACGAAAGCGAAAGGAAGCCAACAATGGAAGTTTGCAAGAGCTGACCAACCGTTCAAGTTCTTCCTCTTCTCACCATGACACATTGTTTGATGACATGATGAACTTCAACGCTACACAAAGGGCACTTGCACCACTGTGTCCCAGTCATTCCTTGAGCCCTTTGAACTTTGGATCAGTGCCATCCTTCTCAGACTCTTTTCCTTTTGGGCTGTTGAATCCTACTGCTTCTTCTGCCGGAATGATGAAAAAGGGCTTTTTTCATAGCTCATCATCGGCATTCACTGAGTTTAATAAGGGTTCTTCTTCCTCGGACAGAAAGGAAGAACATGACGCTGGATTCAAGGATGTTATTTTCTATGATTTTCTTGGTGTCGGTGCTGATGATGAGTGA 573 0.4398 MRLRWRNHLNPSVNRNSFTKEEEERLVAAREIYGAKWATIAKLFEGRTDNALKNHWHVLIARKRKEANNGSLQELTNRSSSSSSHHDTLFDDMMNFNATQRALAPLCPSHSLSPLNFGSVPSFSDSFPFGLLNPTASSAGMMKKGFFHSSSSAFTEFNKGSSSSDRKEEHDAGFKDVIFYDFLGVGADDE 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02403 190 CDD SANT 17 60 IPR001005 -
Vimu1g02403 190 Gene3D - 17 89 - -
Vimu1g02403 190 PANTHER MYB PROTEIN-RELATED 2 85 - -
Vimu1g02403 190 Pfam Myb-like DNA-binding domain 15 59 IPR001005 -
Vimu1g02403 190 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Vimu1g02403 190 ProSiteProfiles Myb-like domain profile. 10 60 IPR001005 -
Vimu1g02403 190 SMART sant 14 62 IPR001005 -
Vimu1g02403 190 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 64 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02403 Vimu-Chr1 34798797 34800544 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02403 2 86 MYB Transcription Factor Family AT3G29020 54.118 3.81e-27 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vimu1g02403 Myb_DNA-binding 6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02403 K09422 - gmx:102660725 158.688
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g02403 1 34798797 34800544 Vimu1g02403 1 34798797 34800544 ECH