Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g02388 ATGGAAACAATGATATTGAAGGAGATGCAGAAGAAGCAGCTGACCAGACTGACCGTGGTGTTACTGATGGCAGTAGCAGCAGCCAGCCAAGCCCTGTCCGGCTGCCGGAGCTCCTGCGGAAGTGTTTCATCGATTCCGTATCCATTCGGCGTCGGCCATTCATCCGTCAGCGGTGAAAACTGTTTTCTGGAGAGCGAATTGGAGCTCACATGCAAAAACTCAACCTTATATCACGGTGACGGTAACGTCGAAATTCTGAACATAAGCCTCGCCGGTAAAATCGAGATTCTCACCTTCATCTCCGAGGTCTGCAAAAACGAATTGCTAGGTGGAGTACAAACACACGGCAACTATCCCTTTCTCATAACACCGGCTTTCGCCATTTCTAGTGAGGACAACAAGTTCGTGAGCGTAGGCTGCGACACCTACGGCTATCTCAACAGTTTCCGGAACGGCACACAATCTTCAACGGGGTGCTTGACCAGATGCAACACCTTAGAGAGCGTTGAAAGCATGCAGAGAAGTGGAAACTGCACGGGCATAGGGTGTTGCCAGGTGGAGATTCCTCCTGGGATGAAGAACATCACTTTCCAAGCTTTCTCTTTCAACAATTTCAATTCCACTTCCGATTTCAACGAGTGTGGCTACTCCTTCGTCGTCAAAAACGGCAACTACACTTTCTCCGTCGATCATTTAAGCGACCTCCCGTTCAATATGACACCTCTTGTCATGGATTGGAGCGTTGGAAGCGACACGTGCGAAGCTTCCATGCTCAGAGCAGATTATGCATGTAAGAGTCCTTATAGCGAGTGTGAGAACTCCCCGTTTGAATATGGTTACCGATGCAAATGTAAACAAGGCTTTCAGGGAAACGCTTACCTTCTCAATGGCTGCCAAGACTTTCATGAGTGTAGTAATAACAAACACAATTGCGATAGTGAAGATCATTGTCGTGAAACTTTGGGATCTTTTGAATGTTTCTGTCCTGACGGACTTATCGGAAATGGGACAAAAGAAGGCGGAGGATGCCACCCAAGGCAGACGGCCAATGCTTTTACGAAGATCGTCATCGGCGCAGGTGTAGGATTAATTGCACTGTTCATAGGGGTTTCTTGGTTGTACTTAGTGTACCAGAAAAGGAAAGTCTTAAAATTAAAGCAGAAGTTTTTTCAGCAGAACGGAGGCATCATTCTGAGACAACAACTCTCCACAAAAGAAGACTCATCTCAGACCACTACAATTTTCAGTGCAGAACAACTTCAGAAAGCCACCAACAATTTTGATGAGAGCTTAATCATAGGTAAAGGAGGTTATGGTACAGTTTTCAAAGGAGTCCTCTCAAACAACAAAGTTGTAGCTATCAAAAAGTCCAAGATAGTGGATCAGAACCAGGTGGAACAATTCATCAACGAGGTCATTATACTGTCACAGATCAATCATAGGAATGTGGTGAAACTCTTGGGATGTTGTCTGGAGACAGAAGTTCCTTTACTAGTCTATGAATTTGTTAACAATGGCACCCTTTATGATTATTTGCATAACCAAGGTCAGGGAGTAAATGTGTCATGGAAAACACGTCTAAGGATAGCTACAGAAGCAGCTGCAGCTCTATCATATTTGCACTCAGCAGCTTCCATACCCATCATCCACAGAGATGTGAAGACTGCTAACATACTCTTAGATGACACTTACACAGCCAAAGTTTCTGACTTTGGAGCTTCAAGATTGGTTCCAATTGACCAAACTGAAATAGCCACAATTGTGCAAGGAACCTTTGGGTATTTAGACCCAGAATACATGCAATCAAGCCAGTTGACTGAAAAGAGTGATGTCTATAGCTTTGGGGTGGTTCTTGTAGAGTTGCTAACGGGGGAGAAACCTTTCTCTTTTGACAGGGCAGAAGAGAAAAGAAGTCTTACAGTTCACTTTCTAAGTAGCTTGAAAGAGGATCGTCTGTTTGATGTTATTCAGGTGGGACTTTTGGATGAAGAAAACCAGCAGGAGATTATGCAGGTTGCTATTCTCGCTGCTAGATGCCTGAGACTTACAGGGGAGGAAAGGCCTAGCATGAAGGAAGTGACAATGGAATTAGAAGGAATAAAGCTTACAGAAAAACACCCTTGGATCAATACAGGAAAAAACTTTGAGGAGAGTGAATACTTGCTTTATGAGGCACAAAGCTCTTATGAAAATGGTGATAGTAGTAGTGGCCAACCGAATACTGGATATGATAGCTTGAGAGAACTTGAACTAATTGACTTTGGTAATGGAAGATGA 2277 0.4405 METMILKEMQKKQLTRLTVVLLMAVAAASQALSGCRSSCGSVSSIPYPFGVGHSSVSGENCFLESELELTCKNSTLYHGDGNVEILNISLAGKIEILTFISEVCKNELLGGVQTHGNYPFLITPAFAISSEDNKFVSVGCDTYGYLNSFRNGTQSSTGCLTRCNTLESVESMQRSGNCTGIGCCQVEIPPGMKNITFQAFSFNNFNSTSDFNECGYSFVVKNGNYTFSVDHLSDLPFNMTPLVMDWSVGSDTCEASMLRADYACKSPYSECENSPFEYGYRCKCKQGFQGNAYLLNGCQDFHECSNNKHNCDSEDHCRETLGSFECFCPDGLIGNGTKEGGGCHPRQTANAFTKIVIGAGVGLIALFIGVSWLYLVYQKRKVLKLKQKFFQQNGGIILRQQLSTKEDSSQTTTIFSAEQLQKATNNFDESLIIGKGGYGTVFKGVLSNNKVVAIKKSKIVDQNQVEQFINEVIILSQINHRNVVKLLGCCLETEVPLLVYEFVNNGTLYDYLHNQGQGVNVSWKTRLRIATEAAAALSYLHSAASIPIIHRDVKTANILLDDTYTAKVSDFGASRLVPIDQTEIATIVQGTFGYLDPEYMQSSQLTEKSDVYSFGVVLVELLTGEKPFSFDRAEEKRSLTVHFLSSLKEDRLFDVIQVGLLDEENQQEIMQVAILAARCLRLTGEERPSMKEVTMELEGIKLTEKHPWINTGKNFEESEYLLYEAQSSYENGDSSSGQPNTGYDSLRELELIDFGNGR 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g02388 758 CDD STKc_IRAK 433 700 - -
Vimu1g02388 758 FunFam Wall-associated receptor kinase 2 397 502 - -
Vimu1g02388 758 SUPERFAMILY Protein kinase-like (PK-like) 407 698 IPR011009 -
Vimu1g02388 758 ProSiteProfiles Protein kinase domain profile. 427 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02388 758 SMART egf_5 303 344 IPR000742 -
Vimu1g02388 758 SMART egf_5 252 299 IPR000742 -
Vimu1g02388 758 ProSitePatterns Protein kinases ATP-binding region signature. 433 456 IPR017441 GO:0005524
Vimu1g02388 758 Gene3D Transferase(Phosphotransferase) domain 1 503 719 - -
Vimu1g02388 758 SMART serkin_6 427 709 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02388 758 Pfam Protein kinase domain 431 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vimu1g02388 758 SUPERFAMILY EGF/Laminin 303 337 - -
Vimu1g02388 758 CDD EGF_CA 300 334 - -
Vimu1g02388 758 FunFam Wall-associated receptor kinase 2 503 720 - -
Vimu1g02388 758 Pfam EGF domain 304 337 IPR024731 -
Vimu1g02388 758 MobiDBLite consensus disorder prediction 726 743 - -
Vimu1g02388 758 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 27 701 IPR045274 GO:0007166
Vimu1g02388 758 MobiDBLite consensus disorder prediction 726 746 - -
Vimu1g02388 758 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Vimu1g02388 758 Gene3D Phosphorylase Kinase; domain 1 393 502 - -
Vimu1g02388 758 Gene3D Laminin 250 342 - -
Vimu1g02388 758 ProSitePatterns Serine/Threonine protein kinases active-site signature. 548 560 IPR008271 GO:0004672|GO:0006468
Vimu1g02388 758 FunFam Fibrillin 2 295 339 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g02388 Vimu-Chr1 34549391 34553265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g02388 9 758 Receptor kinase-like Gene Family AT1G21230 44.125 0.0 591
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Vimu1g02388 Pkinase 5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g02388 - - gmx:100819535 1111.29